Hpun034198.1
Basic Information
- Insect
- Hypomecis punctinalis
- Gene Symbol
- zfh1
- Assembly
- GCA_949316475.1
- Location
- OX438815.1:22425334-22434105[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.4 8.1e+02 2.2 0.4 2 23 188 209 187 209 0.90 2 15 0.017 1.8 10.5 0.3 3 23 270 290 269 290 0.97 3 15 8.4 9.1e+02 2.0 1.6 6 23 302 320 302 320 0.94 4 15 0.077 8.4 8.4 0.1 3 23 332 353 331 353 0.91 5 15 1.2e-06 0.00013 23.6 1.6 2 23 375 396 375 396 0.97 6 15 2.8e-07 3e-05 25.6 0.8 1 23 402 425 402 425 0.97 7 15 0.099 11 8.1 0.3 1 23 431 453 431 453 0.92 8 15 0.00044 0.048 15.5 0.2 1 23 459 481 459 481 0.98 9 15 0.015 1.6 10.7 0.4 1 18 487 504 487 504 0.92 10 15 0.0067 0.73 11.8 1.3 1 23 619 641 619 641 0.97 11 15 0.0003 0.033 16.0 1.8 2 23 648 670 647 670 0.94 12 15 7.5e-05 0.0081 17.9 1.1 3 23 678 698 677 698 0.97 13 15 9e-06 0.00098 20.8 0.2 1 23 704 726 704 726 0.97 14 15 0.0013 0.14 14.0 0.0 1 23 732 754 732 754 0.97 15 15 0.0059 0.64 11.9 1.1 1 23 779 802 779 802 0.96
Sequence Information
- Coding Sequence
- aTGAATATCGGCACAGAACAAGTGTTTATCGTGAATACTACTGAGCTAGGTCAACCGAATCAACAAACATCTACACCTCTGCAGCGGGCCTTCGAAATGCCTGCGCCTGCAGCCGCGATGCCCTCCGAAGGAGATCCGTCGAGCCACTGCCTGGGTCCTGCATCTTTGGGCCCAGAGGCGCGCTCTCAGATGTGCCGGCTATGCGCCACCATCACAGAGCTTGTGGTGCCCATCTTCCATGGCGAGGGGCTGCAGAACAACCTCGCTGACAAGATCCACCAGCATTTACCCATACAGGTGTCGGAGAGCGATGAGCTGCCTGTGGTGGTGTGCTTCCAGTGTACAAGTACATTATTAGCGTGGCACGAACTTGCACTCTGCTCCGTGCAGGCAGACTGCGCAATGCGGGAGCGgttccacctccacagacagcAACAACAGCAACCCAGTGTCCAGTCTAGTCAAAACCAAGTCAAAGATGAAAAGCCCCTCCCAAAAGTCATAAAATACATACTCACCCAGTATGTTGTCTCCATAAACATGGATTCCGAAGTGAAGTTGGTCTGCCAGCGATGTGGTGTCAAAACTACCCTCAACGACTTCACTCTACATCTGGTCACTAAGCACCGCTCGGAGGTGCTGGACGGAAATGCTGTGAAAACGTTCATAAAGAAACATGTCACCTTCGAGGAACCTCTCGATTCCGGTGAGGAATCTGATTTTTTGAGAGACGATTCCGATGTCACCGAGTGTTCCGACTCAAACTCCCCCAAAATCAAGAAAAAGACCAAAATGTCTACTCTGCTATGCCCATACTGCAACAGTGCTTTTTCATCCACCTCCCGGCTTATTTACCACCTAGGAAAGCACATCGAAATAAGCCTGGCAGACGGCGTCGAGTGTTGCCACTCCACCTACAATACTAAGAAAGATTTCGTCTCACACTTGCAAGAAAAGCACATCGACAGACCCGTACAAAATACGGAGGCGATGTGCAAAAGCTGCGGCTACGTCGCGGATTCTCCAAAACAGCTGCAAACACACGTGGAAGAGAGTCACAGCAGAATAGAAGTCAAAAAGCAAAGAAAGGAGAGCGCCAAGAATCAGAAGTGTATCCCGGCCGTGTGCCCCACTTGCAACAAAACGTTCTCCAACAAATATAATATGTTCATTCACATGAAATCCCATGAAGATTCGGTGGTATACGACTGCCCCAGATGCGGGAAAAAATATAGCACGAAGGGAAATTTAATACATCACATAAGGGTGATACACGAGGGAGATTTGAAACACGTCTGCAATTCTTGCGGGGAGCGGTTTCCTACACGCATAGCGCGGGATGTTCACGCCAGGTTGCACACTGGAGACACACCCTTTCGTTGCCAGATCTGTAACGCTTCCTTCCGAGCAGAAAATTCTCTCGCACGGCACCTAGATATGCACTTTAACGTACGAAACCACGCGTGCGGGATCTGCAGGAAAACGTTCAGGAAACGGAGCGGCCTCAAGCGGGAATGGAACCACAACGATGAATCGGACCGAGAAGCCGAAAGTCAACGCGACACCGATGACTCGGACGAGCGTCCGCTGGCCAGTCTCTGCAACGACAAGAGTGAAGCGTTTCTGTCCTTTTACGACGCGCTCGTTCGTTTCCGAAACCACGTCGCGAATGAACACAATCGCCGCTCAGAAACGGAATCGAGCGAAGACGACCGAGAGAAGATTATGGAAGAAACAGGAGTGGAAGCTTACGATGATCTATCTCACAGAAACCGGCGACGATCGCGACTCGATCTCGCCACGCGGCAGGAGATAGCGACCGCGCGGACCCGCACTGACGACGGACGGATCGTCTATATCTGCTCTCTATGCGGGAAACGTTTAAGCTCGGCACATACTCTAATATTCCACCGTCGAATTCATACGGGCGAGCGTCCCTGCGTGTGCCACATCTGTGGCGCTCAATTCCGCACAGGATCGGGTCTTCAGAGACATTTACAAGAAACTCACGAGCGAAGGCGTCGAGTCGCGTGCCGCACGTGCCAGCGGACGTTCGCGAACGCGCAGaacctcaaacaacacacacgGATACATACAGGGGAGCGGCCGTTTGAATGCGGGGTGTGTGGGAAACGGTTCGCGCAGAGTGGCTCCTTGCACGCTCATCGGGCCGTGCATAGGGAAGCTAGGCCGTTTGTTTGTGCGGAGTGCGGGGCGGCCTTTAGACTGAGAGGGGGGCTAGTGAGGCATAGGGCGAGGCATGCGGGACTCCGCGCGCCGTGCCCAAGGAACTCGTTACCACGTGACTCGCGCTCGGCGGGGGAAACACGGCCGCATGCGTGCCAGCTCTGTCCCGCCGCGTTCCGAGCGCGACGGGCCTTAGCGCACCACCAACGGAGACTGCACCAGCTGCCCGCGCAACAGCTGCCGATGCAAGCCACGCTAGACAGTCTGCCGCCACCTTATTAA
- Protein Sequence
- MNIGTEQVFIVNTTELGQPNQQTSTPLQRAFEMPAPAAAMPSEGDPSSHCLGPASLGPEARSQMCRLCATITELVVPIFHGEGLQNNLADKIHQHLPIQVSESDELPVVVCFQCTSTLLAWHELALCSVQADCAMRERFHLHRQQQQQPSVQSSQNQVKDEKPLPKVIKYILTQYVVSINMDSEVKLVCQRCGVKTTLNDFTLHLVTKHRSEVLDGNAVKTFIKKHVTFEEPLDSGEESDFLRDDSDVTECSDSNSPKIKKKTKMSTLLCPYCNSAFSSTSRLIYHLGKHIEISLADGVECCHSTYNTKKDFVSHLQEKHIDRPVQNTEAMCKSCGYVADSPKQLQTHVEESHSRIEVKKQRKESAKNQKCIPAVCPTCNKTFSNKYNMFIHMKSHEDSVVYDCPRCGKKYSTKGNLIHHIRVIHEGDLKHVCNSCGERFPTRIARDVHARLHTGDTPFRCQICNASFRAENSLARHLDMHFNVRNHACGICRKTFRKRSGLKREWNHNDESDREAESQRDTDDSDERPLASLCNDKSEAFLSFYDALVRFRNHVANEHNRRSETESSEDDREKIMEETGVEAYDDLSHRNRRRSRLDLATRQEIATARTRTDDGRIVYICSLCGKRLSSAHTLIFHRRIHTGERPCVCHICGAQFRTGSGLQRHLQETHERRRRVACRTCQRTFANAQNLKQHTRIHTGERPFECGVCGKRFAQSGSLHAHRAVHREARPFVCAECGAAFRLRGGLVRHRARHAGLRAPCPRNSLPRDSRSAGETRPHACQLCPAAFRARRALAHHQRRLHQLPAQQLPMQATLDSLPPPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00826110;
- 90% Identity
- -
- 80% Identity
- -