Hpun006221.1
Basic Information
- Insect
- Hypomecis punctinalis
- Gene Symbol
- -
- Assembly
- GCA_949316475.1
- Location
- OX438797.1:976610-980726[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.4e-05 0.0081 17.9 0.8 2 23 172 194 172 194 0.96 2 14 2.3e-05 0.0025 19.5 1.4 1 23 199 221 199 221 0.94 3 14 7.6e-06 0.00083 21.0 1.2 1 23 227 249 227 249 0.98 4 14 0.00027 0.029 16.2 2.2 1 23 255 277 255 277 0.98 5 14 2e-06 0.00022 22.8 1.4 1 23 283 305 283 305 0.95 6 14 0.007 0.76 11.7 1.5 1 23 311 333 311 333 0.97 7 14 0.007 0.77 11.7 0.1 1 17 339 355 339 356 0.92 8 14 0.24 27 6.8 0.2 13 23 403 413 399 413 0.90 9 14 0.0063 0.68 11.9 0.2 1 17 419 435 419 436 0.92 10 14 0.24 27 6.8 0.2 13 23 483 493 479 493 0.90 11 14 0.0063 0.68 11.9 0.2 1 17 499 515 499 516 0.92 12 14 0.18 19 7.3 0.4 12 23 562 573 558 573 0.86 13 14 4.5e-06 0.00049 21.7 2.4 1 23 579 601 579 601 0.97 14 14 0.001 0.11 14.3 0.4 1 23 607 630 607 630 0.97
Sequence Information
- Coding Sequence
- ATGGACGTCTCCAATATGTGCCGTGGTTGTATGAAAGAAGTTGCTTCCTGGGAAAGAGAGAATTTCGACATGAGAGCTGtagaaatgttttctttttgtacaaacataAGAATTACAGAAGAAGATAGACTCCCGAAACAATTCTGCTACGACTGTATCATTAAAATGGAATCATCATATACTTTCATCACAGAAGCTCAGAAAGTAAATGTTACACTGAAAAATATAGTTTCTAGAACAAGCACTGTGATTGTAGAGCCAGACACAAGTTTTAGAACTATAAATCTTGTAGACAATAGCATAAAGTTAACTTTGCCTGACTACAAAATATGCAGCGTGATAGAGAATGACACAAGGCAGTTTTTAGATCCCATACAAAATCTTCCAGTAGATCATGATCATCTTGAAAACAATATAGAAATAAGAGACGAGACCGAGATACTAGAGACTGAGAAAGTAGTAGAACCATTGGAACTAATAAAGGAAATTGAAAAAGTTGAAACTAAGAAAAATGTGTGTCTAGTTTGTAAAAAGTCATTCATATCTAAAACTTGGTATGAAAAGCATATGCAGAAAGAGCATTCGGGAAAGAAATACATGTGTGCACATTGTACTAAAAGTTTCTCCCGAGCGTCCCAGCTGTCAGCCCACTCCGTGAGCCACTCGGATGAACGGCAGTACTCCTGCACTGCGTGCGGCAAGCGGTTCAAGCGGCGCAAGCAGCTCGCGGTGCACACGCGCGCGCACGCCGACGCGCGACCCTATACCTGCGACCACTGCACTGCAAGGTTTAAAACCAAGAGTATACTGAAAAGCCACATGGCTGTTCATAAAAAGGACAAGCCCTTTTTGTGTTGTTTCTGTGGCTGGAGCTTTACACAAGCGGGAAATCTAAAGGTGCACATGCGCCTGCACACAGGCGAAAAGCCTTATTCGTGCGGAGCGTGCGCGTTTCGCTGTTCCGCCGCGTCGTCGCTGAGGCGCCACCAGCGTACGCACGCCGCGCGCCGCGACCACGTGTGCGCCACGTGCGGGAAAGCCTTCCAGGACTCTAGCAACCTGCTTCATTCCGCTGTGCCGCCGCGTCGTCGCTGCGGCGCCACCAGCGTACGCACGCCGCGCGCCGCGACCACGTGTGCGCCACGTGCGGGAAAGTCTTCCACGACTCTAGCAACCTGGTACGTAGCTTCATTCCGCTGTGCCGCCGCGTCGTCGCTGCGGCGCCACCAGCGTACGCACGCCGCGCGCCGCGACCACGTGTGCGCCACGTGCGGGAAAGCCTTCCACGACTCTAGCAACCTGCTTCATTCCGCTGTGCCGCCGCGTCGTCGCTGCGGCGCCACCAGCGTACGCACGCCGCGCGCCGCGACCACGTGTGCGCCACGTGCGGGAAAGCCTTCCACGACTCTAGCAACCTGGTACGTAGCTTCATTCCGCTGTGCCGCCGCGTCGTCGCTGCGGCGCCACCAGCGTACGCACGCCGCGCGCTGCGACCACGTGTGCGCCACGTGCGGGAAAGCCTTCCACGACTCTAGCAACCTGCTTCATTCCGCTGTTCCGCCGCGTCGTCGCTGCGGCGCCACCAGCGTACGCACGCCGCGCGCCGCGACCACGTGTGCGCCACGTGCGGGAAAGCCTTCCACGACTCTAGCAACCTGGTACGTAGCTTCATTCCGCTGTTCCGCCGCGTCGTCGCTGCGGCGCCACCAGCGTACGCACGCCGCGCGCCGCGACCACGTGTGCGCCACGTGCGGGAAAGCCTTCCACGACTCTAGCAACCTGGCACGTCACAGCCGCACGCACACGGGCGCGCTCCCGTACCAGTGCCCGCGCTGCCCGGCCGCCTTCTCCGACAGCTGGAAACGGAAGACGCACCTCATGCGCACGCACCGGCTCGCGCTCGCCGACATACCGCGCATGCGCACCGACGGACAGATCATACCGCACTCCGCCTTGCCAGTGAGCTAA
- Protein Sequence
- MDVSNMCRGCMKEVASWERENFDMRAVEMFSFCTNIRITEEDRLPKQFCYDCIIKMESSYTFITEAQKVNVTLKNIVSRTSTVIVEPDTSFRTINLVDNSIKLTLPDYKICSVIENDTRQFLDPIQNLPVDHDHLENNIEIRDETEILETEKVVEPLELIKEIEKVETKKNVCLVCKKSFISKTWYEKHMQKEHSGKKYMCAHCTKSFSRASQLSAHSVSHSDERQYSCTACGKRFKRRKQLAVHTRAHADARPYTCDHCTARFKTKSILKSHMAVHKKDKPFLCCFCGWSFTQAGNLKVHMRLHTGEKPYSCGACAFRCSAASSLRRHQRTHAARRDHVCATCGKAFQDSSNLLHSAVPPRRRCGATSVRTPRAATTCAPRAGKSSTTLATWYVASFRCAAASSLRRHQRTHAARRDHVCATCGKAFHDSSNLLHSAVPPRRRCGATSVRTPRAATTCAPRAGKPSTTLATWYVASFRCAAASSLRRHQRTHAARCDHVCATCGKAFHDSSNLLHSAVPPRRRCGATSVRTPRAATTCAPRAGKPSTTLATWYVASFRCSAASSLRRHQRTHAARRDHVCATCGKAFHDSSNLARHSRTHTGALPYQCPRCPAAFSDSWKRKTHLMRTHRLALADIPRMRTDGQIIPHSALPVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -