Hpun041988.1
Basic Information
- Insect
- Hypomecis punctinalis
- Gene Symbol
- -
- Assembly
- GCA_949316475.1
- Location
- OX438822.1:10145626-10150432[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.65 70 5.5 3.0 1 23 101 124 101 124 0.95 2 24 0.0022 0.23 13.3 0.2 2 23 151 172 150 172 0.96 3 24 2.2 2.4e+02 3.8 3.3 3 23 196 216 194 216 0.94 4 24 0.16 17 7.4 0.0 1 19 220 238 220 240 0.95 5 24 0.0088 0.96 11.4 0.3 2 23 250 272 249 272 0.92 6 24 0.89 97 5.1 1.2 1 23 280 303 280 303 0.94 7 24 0.00017 0.018 16.8 0.1 1 23 309 332 309 332 0.98 8 24 4.2e-05 0.0046 18.7 2.0 1 23 339 361 339 361 0.98 9 24 0.025 2.8 9.9 2.9 1 23 367 389 367 389 0.99 10 24 0.045 4.9 9.2 5.9 1 23 395 418 395 418 0.96 11 24 0.15 16 7.6 2.3 3 23 426 446 425 446 0.93 12 24 0.14 15 7.7 0.5 1 23 452 474 452 474 0.97 13 24 0.001 0.11 14.3 0.3 1 23 484 507 484 507 0.96 14 24 1.3e-05 0.0014 20.3 2.7 1 23 513 535 513 535 0.96 15 24 0.21 23 7.1 1.3 1 15 541 555 541 558 0.92 16 24 0.45 49 6.0 0.1 1 23 611 634 611 634 0.92 17 24 0.0044 0.48 12.3 0.9 2 23 705 726 704 726 0.96 18 24 2.7 2.9e+02 3.6 0.4 1 23 731 753 731 753 0.82 19 24 0.27 29 6.7 0.9 1 13 758 770 758 777 0.89 20 24 0.045 4.9 9.2 0.6 3 23 787 808 785 808 0.94 21 24 0.00086 0.094 14.6 0.7 3 23 817 838 815 838 0.96 22 24 1.3e-05 0.0014 20.3 2.0 1 23 844 866 844 866 0.97 23 24 0.00025 0.027 16.3 1.4 1 23 872 894 872 894 0.98 24 24 3.9e-05 0.0042 18.8 0.1 1 23 900 923 900 923 0.98
Sequence Information
- Coding Sequence
- atgaaaactgaaaataaaaagtacgtcaaaaaagaaaagaaagacgTGAAACCCAAAATAGGTGAAAAAAAGTTCAAGAAGATACACGATGTCGTTATCAAGAAAGTGAAATATAAAACGGAGCCTGATCCGGAATCGAATGTCGTAGATTTGTTGAAGAAGCATAAGATATATTGCATGAAGCCGAAAGAACCGGTTGTAGACCatgaaacagaactaaataagCATAGACATAATATTAGAACAATTATGAAGAATACCAACGCTACTCCATTCAGAGCTTTCCACGTAGACGACGGATTCGCTTGCTGCTTCTGTGAACATCTCTTCAAAATGGCTGCCGATCTAAAAACACACACTCTAATGCTTCACGCTATGGATTTAGACGATTTCAAGTCCAAATCTACTTCTATCTTCACATATGTAGTTAAATTAGATATAACCGGGCTGAGTTGTAAAATTTGTGATATGAATGTTAAAACACTCGAAGATTTGTTTGTACATTTACAATCGCATGGACTAGAACTTTTCACGGatatcaaaaatcaaatcgtTTGCTTCAAATTCGACTCAGACGCGCTATGCTGCATGTTTTGTACCAACGAATTCACCAATTTCAAATTTCTTCTCGATCATATGAATgaacattacaataattatatttgcggGGATTGCAATGCTGGTTTCATCAATTATAGGATGCTGTTAGCGCATTCGGAAGGTCAGGATCTTACTGTTGGAGAAGTCAAGTGTCCGATTTGTCGTGAGGTGTTCGAGAAGTATACAAAGTACAAACGACACGAGTTACTAGCACATACAGGCTTCAATCTTAACGTACACGAATGCCTACGCTGCAAAGACATGTTCAAATCCGATGAAAGTTTAAGGGAGCATGTAGAAAAGGAACACGGAGGATGCCACGAATACAAATGTGGTGAATGCGGGAGGATTTACGATTCGAAAACCTTACTCATTGGACATGTTAGGAGAGCCCATCTGCATGAAGACAAGCATTTTAAATGCGACGTCTGTTCTAGGTTTTTTTATACGAGGCAGCAGCTGCAAGCTCATATGTTTATACACTCTGATACGAGGAAATACCAATGTGATACGTGCGCTTTGAGGTTTAAGTGTAAAGCGACGTTGGAGCGACATATTTACACGCACAAACTGAAAGGCAAACACAAATGTCTGTTCTGCGACGACTCCTTCATTAGAATGTCTCATCTAAACCACCACGTTCGTCAAGACCACTTAAACGACAAGAGAAAGAACTGCCACGTTTGTGGGAAGCTGCTATACGAATCCCAGTTGAAAAAACATATGACCCTGAGGCACTCCAGTTTGAAAACGTTCACCTGTTCCGTTTGCTCGCTGGAGTGCGAATCGAAGCTAGCCCTAGTAATGCACATGGGGTCGCATTCGAATTTGAAACCTCTGGAGAAGAAGTACGAGTGCCGTGCTTGTGGGAAAATGTTCCGCAGGGCTATATATGTGACGAAGCACGCACAAAGAGTCCATTTGCTGGAAAAGAGGTTCGTTTGCGACCATTGCGGCAAAAGCTTTGCTGACTGCACGACTTTGAAGAATCATCTAGCGTTACACGGCACTGGACCAGCTTTCCCCTGCTTTGGTTGTACGAGAGTCTTCAAAACTAAGAAGAATCGAGAGAGCGTCAAGGAAAGCACCCTCGAAACACCGACGGATGAAATGCCCCCAGAACCGACTCCATTAGACCAAAAAGAAGCTAGAGAAAAGCTACACAGAGacatgaaaatgattttaatgttttcaAACGCAACCCCAATTTGGAAGCACGGAACCGAAGGCTACGCGTGCGCGTATTGCGAAGACGCGTACATAAAACCGAACAAATTAAAGAAACATACCGAAGAAGAACACGATAACGTTAACGAGGCGCGATTCTTCCTACTCAATCTCTATGAGTACATGCTCAAACTAGACGTTACTGGCTTGAAATGTGGCTGCTGCAAAGAAGCTATGAACACCATCGAAGACCTGATCCATCATCTAAACTTCAAACACAAGAAGAAAATCAACGAGAACATAAAAGATATCATACTTCCGTTTCAATTTCACTCGAAGGAATTGCGATGCGTTGTTTGTTACAAAGATTTTCCGAATTTCGACCTGCTCCACCAGCATATGGTAACGCATTGCGATAACAAGTTTGTTTGTGAAATATGCGGCAGTggtttcctgtgggatagcgcTTTGCAAGCGCATATCAAGGATCACAAAGACCCTGCTTTTAAATGTAATTCCTGCTCCAAGAAGTTCACAACAGCACAGCGTCGGGATCAACACGCCTCTGAATGCAGGAGACAGACAATCATCTGCGACTATTGCTCAGAAAGCTTCTCAAATACTACGAGGAAGACCTTGCACATGGAGAAAGAGCATGGGAGCGGAACGAACAGACTAGCTTGCAATAGCTGCAACAGATACTTCCGCAATACCGAGGCACTTAATTTACATATCAGACGAACCCATATGATGGAAAGAAATTTCGCCTGCCAAGAATGTGGAAAGAGCTTCTTCACACGTGCAGGTTTGAGGAGACATCACTTGTCGCATACTGGGCAGAAGGACTTCAGATGTGACTCCTGTCTAAAGTACTTCCAGTCTCGGTATAACTTGGTGGTGCATATGCGTATACATACTAATGAGAGGCCGTTCCAGTGCCAGGAGTGTGATGCAGCGTTTGCGCAGAAAGCTGGCCTGCAGGGGCATATGAAGTCGAAACATGGTGTGATTCTTTAA
- Protein Sequence
- MKTENKKYVKKEKKDVKPKIGEKKFKKIHDVVIKKVKYKTEPDPESNVVDLLKKHKIYCMKPKEPVVDHETELNKHRHNIRTIMKNTNATPFRAFHVDDGFACCFCEHLFKMAADLKTHTLMLHAMDLDDFKSKSTSIFTYVVKLDITGLSCKICDMNVKTLEDLFVHLQSHGLELFTDIKNQIVCFKFDSDALCCMFCTNEFTNFKFLLDHMNEHYNNYICGDCNAGFINYRMLLAHSEGQDLTVGEVKCPICREVFEKYTKYKRHELLAHTGFNLNVHECLRCKDMFKSDESLREHVEKEHGGCHEYKCGECGRIYDSKTLLIGHVRRAHLHEDKHFKCDVCSRFFYTRQQLQAHMFIHSDTRKYQCDTCALRFKCKATLERHIYTHKLKGKHKCLFCDDSFIRMSHLNHHVRQDHLNDKRKNCHVCGKLLYESQLKKHMTLRHSSLKTFTCSVCSLECESKLALVMHMGSHSNLKPLEKKYECRACGKMFRRAIYVTKHAQRVHLLEKRFVCDHCGKSFADCTTLKNHLALHGTGPAFPCFGCTRVFKTKKNRESVKESTLETPTDEMPPEPTPLDQKEAREKLHRDMKMILMFSNATPIWKHGTEGYACAYCEDAYIKPNKLKKHTEEEHDNVNEARFFLLNLYEYMLKLDVTGLKCGCCKEAMNTIEDLIHHLNFKHKKKINENIKDIILPFQFHSKELRCVVCYKDFPNFDLLHQHMVTHCDNKFVCEICGSGFLWDSALQAHIKDHKDPAFKCNSCSKKFTTAQRRDQHASECRRQTIICDYCSESFSNTTRKTLHMEKEHGSGTNRLACNSCNRYFRNTEALNLHIRRTHMMERNFACQECGKSFFTRAGLRRHHLSHTGQKDFRCDSCLKYFQSRYNLVVHMRIHTNERPFQCQECDAAFAQKAGLQGHMKSKHGVIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -