Hpun040864.1
Basic Information
- Insect
- Hypomecis punctinalis
- Gene Symbol
- -
- Assembly
- GCA_949316475.1
- Location
- OX438821.1:15955202-15963376[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5e-08 5.4e-06 27.9 0.6 2 23 200 222 199 222 0.95 2 13 0.0046 0.51 12.3 0.5 2 23 229 251 228 251 0.96 3 13 0.006 0.66 11.9 2.6 2 23 258 280 257 280 0.93 4 13 9.1e-07 9.9e-05 23.9 0.5 3 23 289 310 288 310 0.97 5 13 8.6e-05 0.0094 17.7 1.2 1 23 316 339 316 339 0.95 6 13 0.00046 0.051 15.4 0.4 1 23 346 369 346 369 0.97 7 13 9.3e-06 0.001 20.7 3.4 2 23 375 397 375 397 0.96 8 13 0.00042 0.046 15.5 3.4 1 23 411 434 411 434 0.96 9 13 0.0026 0.29 13.0 0.7 3 23 445 466 444 466 0.95 10 13 6e-06 0.00065 21.4 0.7 2 23 472 494 472 494 0.97 11 13 0.17 18 7.4 2.7 2 23 502 524 501 524 0.91 12 13 1e-05 0.0011 20.7 2.9 1 23 529 551 529 551 0.98 13 13 0.022 2.4 10.1 1.7 1 23 557 580 557 580 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAATTACGTGAAAgtataaaaattgaaatcaaagAAGAAATCGGTGATGATCAGAATGCAGTCATAGGAGATAATTGTTCAATTTTGGGTATGAAAAATGAATTGAAACCTTCGGAAAGTGATAAGTATACTACCAATCATAATAAtactttaaaattcaaaaacaatGAAAATTCATATCCTCAGCAGAATGATAAATTTGAATATTCACAGCAAAATGAAAATTCAGAGACAAATGTCCGGCAAAACGAAAATGCAGAAGCGTTATTGCAAAACAAAATTGTAGAGGAATCATGGCAAAATGAAAAAGCTGAAGCGTCATGGCAAAACAAAAACTCAGAAGCATGGCAAAACGAAAACGCAAAAGCGTCTTGGCAAAACAAAAATGGAGAGACATCATGGCAAAACGAAAATGCTGAAGCATCATGGCAAAACAAAAACACTGAAACATCATGGCAAAACGAAAACACGTCACAAAACACTGCATATACGGAGAAAAACCATTCACAAAAAGATCAAAACTACAATATGGAGTCGTCACAACCCTGTGAAATgggtaaagtatatgataacgGCAAAATAAACAGACTCGAATGCCCAAAATGTGGGAAATCTTTCAAAAACCgtgctaatttaaaaaatcacatCAAATATGTGCATTCGGACGACCAAACTGTTGAATGCACCGAATGTATGCGCAGTTTCAAATCCCTGTTGTATCTCCGGTCTCACATGAGCTCTGTACACGCTAAAACCGAACTGGTTGAATGTGAACATTGTAAAAAAGTGTTTCTCAACaagaaaaaattgaataatCATATATATTACACGCACAGGCAACCAGAGGAGCAAGTGGCGTGTAAGATTTGCAAGAAATCTTTTAAAGGGCCGTATAATTTGAAGATCCATATGaggtacgtccacccacaaggcgaCCCGCACCCATGCCCTTTCTGCTATAAAACCTTCAAAGTAGAAATGCTCCTACAACGCCACATGAAATGGGCCCACCCGGTCGACGGCATGATATACAAATGCCAAGAGTGCAACAAAATCCTCCCTTCCTTAGACGGCTACAAAACCCATATGAAAAACGTGCACCTATTCGACCGAGCTACTTGCGACACTTGCAAACGaactttcaaaactaaaaaatcctTAGAACGACATATGAAGAATATTCACACAGGAGACAAGCCGACAGAAACGTACATCCCTAAAGAACATACTTGTCAGTACTGCGAACGCACGTTCAATAACACCACATCTCTATTCTGGCATATAGAACGGTATCACGCGCAAGTGCAAAAGTTGCCGAATAATTTTTGTGTGATCTGTAGCAAAGATTTCTCGGACTACGCTGCTTTGCATCGACATTTAACGTCAGTGCATTCTTTAGAAACAGCTACGTGCAAAATTTGTTTCAAAGAGTTCAAATCGCCTATAAATTTGCAGAAtcatattagaataacacacgCGCCGCCTGAGGCGGAACAAAAATGTGACACCTGTCAAAAAGTTTTCAAATGTCCACTACATTTACGAATGCACGTGTTAGCGGTTCATGATGGAGGAGAATATCCgtgtgacatctgtcaaaaaaCTTTCACCTCAACAAAGTATTTGAATAAACACAAAAAGTCGCACTTACAGTCACGGGATTTTCAATGCGATGTTTGCTTGAAGATGTATAAAAATATCCATGCCGTGAACAAGCATAAAAAACTAGTGCACAATGGGGTTAAATGCAATATTTGTAACATAAAACAAGCTAATATTGAcgatcattttaaaaaatgtcaccCAGACGTTGCATTGAACTTAACTATGGATTCTATGCAAAACATAGACTCTGCGGAAGCCATGGGCTTATTACTGGCCGCAAAAGCACTGGAGCCACCTCCTGGAATCGCAGACTCCAAGGAAGCGATTATGTTCACGGTTGACAGAGCTGCCACAATCTATGCGCTCAGGAGACCTATAACAAGGTCCAGAGTAATAGCTGAGTGCCATGCAGCACTCcaaagtattttaaataaacacaGAACCATCGTACGTTGGACAAAAAGTCACGGCTTGTGTCCGGGTAACAACATAGCAGACACCCTTGCCAAGGAGGGCACGAAAAAACAGGTGGACAAAGCAGCTAGACACTgcaagccgacagcggtggaagtgcgtgatctactgcgctactga
- Protein Sequence
- MEELRESIKIEIKEEIGDDQNAVIGDNCSILGMKNELKPSESDKYTTNHNNTLKFKNNENSYPQQNDKFEYSQQNENSETNVRQNENAEALLQNKIVEESWQNEKAEASWQNKNSEAWQNENAKASWQNKNGETSWQNENAEASWQNKNTETSWQNENTSQNTAYTEKNHSQKDQNYNMESSQPCEMGKVYDNGKINRLECPKCGKSFKNRANLKNHIKYVHSDDQTVECTECMRSFKSLLYLRSHMSSVHAKTELVECEHCKKVFLNKKKLNNHIYYTHRQPEEQVACKICKKSFKGPYNLKIHMRYVHPQGDPHPCPFCYKTFKVEMLLQRHMKWAHPVDGMIYKCQECNKILPSLDGYKTHMKNVHLFDRATCDTCKRTFKTKKSLERHMKNIHTGDKPTETYIPKEHTCQYCERTFNNTTSLFWHIERYHAQVQKLPNNFCVICSKDFSDYAALHRHLTSVHSLETATCKICFKEFKSPINLQNHIRITHAPPEAEQKCDTCQKVFKCPLHLRMHVLAVHDGGEYPCDICQKTFTSTKYLNKHKKSHLQSRDFQCDVCLKMYKNIHAVNKHKKLVHNGVKCNICNIKQANIDDHFKKCHPDVALNLTMDSMQNIDSAEAMGLLLAAKALEPPPGIADSKEAIMFTVDRAATIYALRRPITRSRVIAECHAALQSILNKHRTIVRWTKSHGLCPGNNIADTLAKEGTKKQVDKAARHCKPTAVEVRDLLRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -