Hpun013123.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypomecis punctinalis
Gene Symbol
-
Assembly
GCA_949316475.1
Location
OX438801.1:9162026-9190054[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 3.6e-05 0.0039 18.9 2.2 1 23 530 552 530 552 0.97
2 20 0.0031 0.34 12.8 0.9 1 20 558 577 558 580 0.94
3 20 2.7e-05 0.003 19.3 5.6 1 23 599 621 599 621 0.98
4 20 0.00013 0.014 17.1 4.1 1 23 627 649 627 649 0.99
5 20 4.8e-05 0.0053 18.5 5.3 1 23 655 677 655 677 0.97
6 20 6.2e-07 6.8e-05 24.4 4.9 1 23 683 705 683 705 0.98
7 20 1.2e-06 0.00013 23.5 2.3 1 23 711 733 711 733 0.98
8 20 0.00013 0.014 17.1 6.7 1 23 739 761 739 761 0.97
9 20 0.00013 0.014 17.1 6.5 1 23 767 789 767 789 0.97
10 20 6.3e-07 6.9e-05 24.4 1.9 1 23 795 817 795 817 0.98
11 20 6.5e-05 0.007 18.1 7.9 1 23 823 845 823 845 0.98
12 20 3.3e-05 0.0036 19.0 6.6 1 23 851 873 851 873 0.98
13 20 3.3e-05 0.0036 19.0 4.3 1 23 879 901 879 901 0.98
14 20 1.1e-05 0.0012 20.6 5.0 1 23 907 929 907 929 0.96
15 20 1.4e-05 0.0015 20.2 5.2 1 23 935 957 935 957 0.98
16 20 4e-06 0.00043 21.9 6.0 1 23 963 985 963 985 0.98
17 20 7.7e-05 0.0084 17.9 7.9 1 23 991 1013 991 1013 0.97
18 20 1.5e-06 0.00016 23.3 5.3 1 23 1019 1041 1019 1041 0.98
19 20 0.00017 0.018 16.8 0.5 1 23 1048 1070 1048 1070 0.97
20 20 8.3 9.1e+02 2.0 0.6 1 10 1079 1088 1079 1089 0.93

Sequence Information

Coding Sequence
ATGGGGCTTAAGGGCAAACGCACACTTCTTTATCTATGTGATTTGTGCAGAGAAGCCCTGTTTCAAGTGCCCAAGCTCATAAAATCATACGACGGGCTGAGAAAGGAACTTGACGAAGTGAAGGAGCTCTTGTCACGGACGAATTGTGCGGGTCGGAACGACGGGCAGCCGCCGGCAGCGGCAGCAACACAAGAGCCGTCACCTCTCAGCACAAATGCAATTTTAGAGGAGCTTCAGGAGCGCGAACGCAGAGCTAATAATGTGATCCTGGTAGGCATTAAGGAGAGTGGTTTAGACAATGGCAGGGACAGGAAAGGTTATGatgaaaagtttgtgagtaaggTCCTCAAGGATATCAATAGTGGGGAGGACTACTCTTCTAAAGTTTCGTCAGTGCAGCGTCTTGGTCGTCGAGAACCTGGAAAGCAACGGCCGCTGAAGGTGGTGTTCAAAACCCGTCAGGATGATGTGCAGATTCTGAAGAATAAGAGTAAGGCCCCTAAAGAGGTAAGAGTTTATGATGATAAGACACCTAAACAAAGGGAGGAGATCTATAAATTACGGGACACTCTCAAAAGCCGAATTGAAAAGGGTGAAACCAATCTCACTATAAGATTAGACAGaagccacaaaaagaagaaaTCCGAGGGGAAAACTAGAGCTGGGGGAGTAGCAATATATGTCAGGGACCACTTGGATGGTATGCCGATCATAGCTAAACGTAATCAGAGATATATGTGTGAAGATGTGGAAGCACTCTACCTTGACATTCAATTTGAAGCGCTGGTTGGTCACAGCCAAGAGCTAGCGCAGGCCGCAGGGTCCCAGGTGTCGGTCGGCGGACAGCCAACCCACCAGCAGGTACCCAATAACCGGGTCGAATTTGTACAACACCATAACATTGATATGGGACACCATTCCCAACAACACATTCTGCAGCAGCAGCTTATGACAGCCCGCCCTGATCACTCCAATCAACAGATCCAGCTGACAGTGAGTGAAGACGGCATCGTGACGGTCGTGGAGCCGAGCAACAGCAAGTTGGTGGACAAGGAGGAGCTCCACGAGACCATCAAACTGCCCTCCGACCATCCCCTCACCATCCACCAGCTGCAACAAATTGTTGGGCAACAGCTCGGTTCCCAAGTGCTAGAGAACGTGGTGCGCATAGAGCAGGCGACGGGCGAGCCGGCGAACATTCTGGTCACACACAATGCGGACGGCACTACGTCCATAGAAGCGAGCGCCTCAGATCCGTTGGCTATCGTCAAGGATGAGAAAACGCAGGGAAAAATGGAGACGGCACAGTTCGCGATACCCGCCGAGATTAAGGATATCAAGGGTATTGATTTGAAGAGTGTGGGCGCGATGGGCATGGAAGGCGCGGTGGTGAAGATATCGACCGGGACCGACCACGACATGACCGCCATGTACAAGGTCAACGTCGAAGACTTGTCACAGTTGCTGGCCTACCACGAGGTCTTCGGGAAACTGAACACAGACGGCCAAGCGCAGAACAAAGGCGAATTAGAGATCGAAGTGCCAGGCTCTAGCCAGATGTCGGAAGCGGAGTCGTCGCCCGGACACCATTCCTGTGATATTTGCGGGAAAGTGTTCCAGTTCCGGTATCAACTTATTGTTCACAGACGGTACCACGGCGAAAGCAAACCCTACAGTTGTCAAGTATGCGGTTCGTCGTTTGCCAATCCGGTTGAATTATCAAGACACGGGAAATGCCATCTTGCCGGAGATCCAGTGGAGAGACACGCGAAGCGAATGCCTCAAGACAAGCCGTACGCCTGCACAACTTGCCATAAAACGTTCTCGCGGAAGGAGCACCTCGACAACCACGTGCGGAGTCACACGGGGGAAACGCCTTACAGATGCGACTTCTGCGCGAAAACCTTCACTCGCAAGGAGCACATGGTGAACCACGTGCGGAAACACACGGGCGAGACGCCGCACCGCTGCGATATCTGCAAGAAGAGCTTCACTAGGAAAGAGCACTTTATGAACCACGTCATGTGGCACACAGGTGAAACGCCCCATCAGTGCAATGTTTGTGGCAAGAAGTATACTAGAAAGGAGCATCTCGCGAACCATATGAGGTCTCATACCAACGACACGCCGTTCAGGTGTGATCTGTGCGGCAAATCGTTTACCAGGAAGGAACACTTCGTCAATCACATTATGTGGCATACTGGCGAAACCCCCCACCGTTGCGACTTCTGTTCAAAAACGTTCACGCGCAAGGAGCACCTACTGAACCACGTGCGGCAACACACGGGCGAGTCTCCGCACCGATGCAACTTCTGTTCCAAATCGTTCACGCGGCGGGAGCATCTCGTCAACCACGTGCGGCAACACACGGGCGAAACGCCCTTCCAGTGCGGCTACTGTCCTAAGGCGTTCACTAGGAAGGACCATCTCGTGAACCACGTCCGGCAACACACGGGCGAGTCCCCGCACAAGTGTTCGTTCTGCACGAAGTCGTTCACCCGCAAGGAGCACCTCACGAACCACGTGCGGCAACACACGGGCGAGTCTCCGCACCGCTGCACCTACTGCGCCAAGTCCTTCACCAGGAAAGAGCATCTTACCAACCATGTCCGACAGCACACGGGCGAAACGCCACACAAGTGCGGGTTCTGCCCGCGAGCGTTCTCGCGCAAGGAACACCTCAACAACCACGTGCGGCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACTGCAACAAGAGCTTCACCAGGAAGGAGCATCTCGTCAACCATGTCAGGCAACACACGGGCGAAACTCCGTTCAAGTGCACGTTCTGTTCGAAGTCGTTCTCTCGCAAGGAGCACCTCACCAACCACGTCAACCTGCACACGGGCGAGACGCCCCACAAGTGCCCATTCTGCACTAAAACATTCTCCAGGAAGGAGCATCTCACCAATCATGTCAGAATCCACACGGGCGAGTCGCCGCACCGATGCGACTTCTGTCAGAAAACGTTCACTCGCAAGGAGCATCTGACGAACCATCTCAAGCAGCACACGGGCGACGCCGCACACACTTGCAAGATTTGTTCCAAGCCGTTCACGAGGAAGGAACATTTGATCACGCATATGAGGTCCCACAGCTGCGGGGAGAAGCCGTACAGTTGCAACGAGTGCGGGAAATCGTTCCCGTTGAAAGGGAACCTGATGTTCCACGAACGGTCGCACCAGAAGGGCAACGGAGCGCGCCCCTTCCGCTGCGACGTCTGCTCTAAGGACTTCATGTGCAAAGGTATGTATTCTTTTTATCTTTGA
Protein Sequence
MGLKGKRTLLYLCDLCREALFQVPKLIKSYDGLRKELDEVKELLSRTNCAGRNDGQPPAAAATQEPSPLSTNAILEELQERERRANNVILVGIKESGLDNGRDRKGYDEKFVSKVLKDINSGEDYSSKVSSVQRLGRREPGKQRPLKVVFKTRQDDVQILKNKSKAPKEVRVYDDKTPKQREEIYKLRDTLKSRIEKGETNLTIRLDRSHKKKKSEGKTRAGGVAIYVRDHLDGMPIIAKRNQRYMCEDVEALYLDIQFEALVGHSQELAQAAGSQVSVGGQPTHQQVPNNRVEFVQHHNIDMGHHSQQHILQQQLMTARPDHSNQQIQLTVSEDGIVTVVEPSNSKLVDKEELHETIKLPSDHPLTIHQLQQIVGQQLGSQVLENVVRIEQATGEPANILVTHNADGTTSIEASASDPLAIVKDEKTQGKMETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISTGTDHDMTAMYKVNVEDLSQLLAYHEVFGKLNTDGQAQNKGELEIEVPGSSQMSEAESSPGHHSCDICGKVFQFRYQLIVHRRYHGESKPYSCQVCGSSFANPVELSRHGKCHLAGDPVERHAKRMPQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCDFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCNVCGKKYTRKEHLANHMRSHTNDTPFRCDLCGKSFTRKEHFVNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCGFCPRAFSRKEHLNNHVRQHTGVTPHACSYCNKSFTRKEHLVNHVRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDAAHTCKICSKPFTRKEHLITHMRSHSCGEKPYSCNECGKSFPLKGNLMFHERSHQKGNGARPFRCDVCSKDFMCKGMYSFYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-