Hpun005526.1
Basic Information
- Insect
- Hypomecis punctinalis
- Gene Symbol
- -
- Assembly
- GCA_949316475.1
- Location
- OX438796.1:21107657-21110013[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-11 1.2e-08 35.9 0.0 2 36 26 61 25 68 0.90 2 2 0.97 2.5e+02 2.9 0.1 23 37 447 461 447 466 0.83
Sequence Information
- Coding Sequence
- atggttcGTGAATACAAGAGAACGTATCGGCACGTAAGACTTGGAAAAACATTCTTACCTTATGTGTCTTATACCACAGAAGACCTAGAAAATGCTGTGCGTGAAGTGAGAGAAGGAGACAGTTCAGTCCGACAAGCAGCAACCAAATATAATATACCCAAAAGCACACTTGCCCagaaaattcTAGAATCTTGCGAGTCACTAAACATTTCATTCGTCTGCTTGCCGTCCAAGTCCACACACTTGATGCAACCGTTAGATGTCGCCTTTTATGGACCGTTAAAGAAATACTGGAAGAACATTCTAACAAACTGGAAAACGACAGCAGATGgtagaaaatataaaacaatggCAAAGTCTTGTTTTCCAAAGCTTCTAGCTCAATTATGTGATTTAATGATTGAGAAAGACGTGATATCAGCCAATTTAAAAGCGGGTTTTGAAAAGAGCGGTCTATTCCCTGTAAACCCTGAAAGACCGAAATCAAGACTACCAAGGGCACTGGTTACAGCTGCAGAAGTTAACCTAGCTACTTCTGAAGTTGTGATTGATATATTACAAGACATGAGAGGCTTTAAGGACACTGCTCCAAGCAAAAGAAGGAAGCGGTGCGATGTAGAACCAGGGAAAAGCATATGTGCAAAAGATTTAACTCCAAAACCAACAACGAGCACTAAAGGCAAAGGACAAGGAAAAAAAACCAAAACTcatgtaaacaaaaaaattacaacgtCATCTCAGAATATCAACAAAAGTAGGAATCCAACAAAAAAGAGACTGAACAAAGCTCAACATGATTTAGACGAATCAACCAGTGTGTCTGATAATATGAGCCAGCACAGTGATTCTGATTTGATGGATTTAGATTTGAGAAAAGAGTATGGCAGTGATGATACCAACTGTTCTGAAGAACAAGCTTTTTCGATATCCTATTTTGAAAATAGAGTTCTATCAGCAGAGCCCGAACCAGGCCCTAGTGGAGAATCATCACGACGTCGTGCAGTGAAACCAAGACCAGAGCCTTGTGAGAATACATTGCCAGACTATGAAGAGGAGTTAATATTAGGTTCTAATGAAAAGGCAGCACGTAGTCGTAATGAGGCGTCAATGGCAAGCCCGAACGAAGAGGAGCTAGCACAAAAGCCAGGGTATGGCTCTAACCTGGAGTCAGTACAACACCATAGTGGTCAGCTAGCTCAGAACTGTGAGGAAGAGATAATAGCATGTCCACTAGCACAAGGCTCTAATGAGCAGCCAGCACCAGGCCCAATTAATCAGCTAGAACCAGAAAATTATGAGGAGGTAGCAGGttattcaaatgaaaatttaCCACCAGATTCTAATATTTATAACGTAAATGATACGGTCTTAGTGAGGTACTACATTAAAAAGTCTTGGAAATATTATGTTGGCGTGAtagaacattttgaaaactatTCTTACACCATTTCATTCTACAAAACTGTACGGCAAAATGATTCAGACATAATACTTATGAAACCTAAAAGAGTCGACCGAGATATTTTACCAGAAGTTTCATTGGTGAAacatattaatataaaacaaatttcATCCAAACCTGAAAAATATTTGGTTGAAAATGAAGATGACAagatttattttgattgttaa
- Protein Sequence
- MVREYKRTYRHVRLGKTFLPYVSYTTEDLENAVREVREGDSSVRQAATKYNIPKSTLAQKILESCESLNISFVCLPSKSTHLMQPLDVAFYGPLKKYWKNILTNWKTTADGRKYKTMAKSCFPKLLAQLCDLMIEKDVISANLKAGFEKSGLFPVNPERPKSRLPRALVTAAEVNLATSEVVIDILQDMRGFKDTAPSKRRKRCDVEPGKSICAKDLTPKPTTSTKGKGQGKKTKTHVNKKITTSSQNINKSRNPTKKRLNKAQHDLDESTSVSDNMSQHSDSDLMDLDLRKEYGSDDTNCSEEQAFSISYFENRVLSAEPEPGPSGESSRRRAVKPRPEPCENTLPDYEEELILGSNEKAARSRNEASMASPNEEELAQKPGYGSNLESVQHHSGQLAQNCEEEIIACPLAQGSNEQPAPGPINQLEPENYEEVAGYSNENLPPDSNIYNVNDTVLVRYYIKKSWKYYVGVIEHFENYSYTISFYKTVRQNDSDIILMKPKRVDRDILPEVSLVKHINIKQISSKPEKYLVENEDDKIYFDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01182599;
- 90% Identity
- iTF_01182599;
- 80% Identity
- -