Hato004353.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypomecis atomaria
Gene Symbol
-
Assembly
GCA_964007245.1
Location
OZ023281.1:3227717-3232246[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.2 18 7.2 3.4 2 22 185 205 184 205 0.95
2 15 5.5 5e+02 2.7 0.4 1 20 303 322 303 325 0.70
3 15 0.6 55 5.7 0.4 2 23 460 481 459 481 0.96
4 15 0.085 7.8 8.3 1.0 3 23 561 581 560 581 0.98
5 15 0.034 3.1 9.6 0.5 1 23 589 611 589 611 0.97
6 15 0.14 12 7.7 3.4 1 23 651 673 651 673 0.95
7 15 0.00027 0.024 16.2 4.0 1 23 681 703 681 703 0.99
8 15 0.51 47 5.9 0.8 1 23 864 886 864 886 0.95
9 15 0.038 3.5 9.4 1.5 1 23 892 914 892 914 0.97
10 15 0.009 0.82 11.4 1.6 1 23 980 1002 980 1002 0.95
11 15 0.016 1.5 10.6 0.9 1 23 1008 1030 1008 1030 0.95
12 15 0.0075 0.68 11.7 2.6 1 23 1121 1143 1121 1143 0.97
13 15 0.00019 0.017 16.7 1.4 1 23 1149 1171 1149 1171 0.99
14 15 0.35 32 6.4 2.0 1 23 1263 1285 1263 1285 0.96
15 15 0.017 1.5 10.6 3.9 1 23 1296 1318 1296 1318 0.98

Sequence Information

Coding Sequence
ATGGGTTTACAATACGCAGAGAGGGACATTGTGAGCTGCAACAGTGACTCAAACGACGCGGGCTCGTCGCACGCAGACCTGCACCGGGACGCCGCGCACGACGGCCCCGGCCAGTTCTCCCCGGGCTCCGCCACTGACGACCCGAAGTCGCTGAAACAGAGCAGGAAACCCCCACGCCCGATACCGCAACTCATCCCGCTAAACTCCTCTACTCCTAATCAAAAAGCACCCGGCGAGCCTCCGGCCAAAAAATTCAAAGAATCCACGACCTCAGAATTAGTCGGAAAGTTTGAAAACTTACCGGAAGATATCACTTTGATACCCGTCAATGTGCCCGCTAAAGAAACCACAGTACGCAagaaaaataattcatttttcgACAAGTTAAAAGAAAGACTTTTGACCGAAACGGGAGAAGAAGGATCGCTCAAATGTAAAAATTGCGGTTTCGAAAGCAAATGTCTCTCGGAGCATTCCGTGCACGAGAAAAATTGCTCCACTCAAGCCAATCGTATTACGATGAGTGCGGCGCTTCCGAGCAAGGGTTCAACTCGCTGCCAAAATTGTAGACATAGATGTAAATCGAGCGCGGATCTATATGTGCACATGCAAACCTGtggaaagaaaaataatattccaACCGATAATGTTACAGAAAGCAAATTCAACAATGAAGCTTCAACGTCACAATTTGAAAAGGAAGCGGAACCGCATCCGATGGAAAACGTAGTTTTCGTCTGGAATAATATCAATCAGGACACAAATAAATTCGATAGACCTTTAGATATCAACATTAATGATGACTCTACAGTTACTGACCTAAATCGGCATTACGACACCGAAACTGTGGACGAGAATGAGGGCATGAACTTGTCACCGAATAGCTTGAGTCTCGGCAAGAACGTATATAAATGTCCAGATTGTAAATTCTGGGCCGCCACCGCATCCAGGTTTCATGTGCATATTGTAGGTCACTTGAATAAAAAGCCGTTCGAATGTTCGCTATGCAAATACAAGTCTAATTGGCGATGGGATATCACCAAACACATCAAGTTGAAATCGGCCAGGGACCCGGAGCACAATGACGCTAAGGTACTAATGACTGATGAAACCGGCAGAAGAAACTACAGCAAGTACAACAAGTTCTTGGCTGTGCcagttttaaatgaaaatggtGAGAACGAGTTCCACTACATAGATCCAAATACGACGATGGACGCGTCCATGGAAGTGGATGAATCGTACGGCAACGAGGCGACTGACATGATGCACGTGTCGTATGAGATGCAGCCTCTCAATTTGCAAACTCAATCCGCAGAGAAATATCTTATGGATAACAGAAATATGGAAAGCAAAAAGCCCAAGAAGACATTATggaaatgtaaaaaatgcaactataaAGATCCATCAAAAGAAGCTTTGCTGGAGCACGTCAGGCAGCACTCGAGAGAGGGCGGAGACGACGCTCCTCCGAGTAACAATAAGAAATTGGAAAATGCTCCTGATCCTGCAGACCTGGCGTACCGATGTGGACATTGCAATCAGCTTTCAAATTGGAAACACGTCATACAGAGGCATTGTCGTCTGAAGCACGACGGAATCATTAAAGTCATCACTACGGTGAAACCAAAGCCGGATCTGTCTCAAGTGCCAGGCAACGAAGAAGTATACAGCGATCTGTGTACGAAGTGTCCATTCAAGGCCAATGACAaaaaacaacttcaagaacATTTGCAACAGCACCAGCCTTCGCCGGAATCTATCTTCAAGTGTTATTTCTGCCCTTACTTTGTCAAAGACGAGCAGGACTTGATACAGCATCTTTTACTACATGGAATAACCGATCCTGAGGATTATATTTCGAAAGCAATGGGATGCAAATCCCCGTTACCAGACCGAATTCTCCCAAACCCCGATATATCGACACACCCAGGGACTTCGACAAAACGCCATAAATGTACTGAATGCCCTTATGAGACAAACAGTAAATCTCAATATATGTATCATGAGCAATTTCACAGGCTCCCAGCCGACACCCCCTACAAGTGCCCAGAATGCAATTATAGCGTATCAAAGAGACATTTACTCCACCAACACTTAAGAGTGCACGGCATCCACCCGTCAGCGGACCGCAAGAAGAACGAGTCAGAAGCGGAATTGGAAGCCAATGCGGCTTGTCAAAGTAGACTAGACAAATCAGATTTCGCGGAAGACATACCTTTTGTTTGGGTTTCGGCAAGGAATGAATTCCACAAAATGTACAAGTGTCGCTATTGTTCGTATGTCAATTCTCAAAAATGTAAGTTACCAAATCATGAAAAAATTCATTGTCTGGAATTTGAAAATAGCGacgttattatttataaatgtttagAATGTAAATTCACGTGTGATGACCCTGAAAAAGGTGCAGAGCATTCCAAAAAGCATGGCCTGTTGTACGGTCGCATCTACAGCTATGTAGAAGATGATATTCCAGATGAGGATCAAATCGCTAAATTACGCAGAGTTATCGAACAGGAAAAAGCTTTAGAAGAATCCACTAAAGAAGAAAATACTGCAACCGACCCACCTGAAAATAAGATCATGTTTTACTGTTCAAAATGTCCAGCTAATTATTTCAGCGAAAGTGAAATAAAAGTCCATGAAAAGTTCCATGACCGTTCTTTGGAACATAAATGTAAAACATGCGAATTTTCTGTATCTGAACAGACTGAATTGACGGCGCATGAAACTATGCATTCGGATGATTACCATATAAGGACAAACATGCATAAATTTGTTTACAATTACCATTCGCTGTACAAGCCACCTCGCCTGGAAACTATCCGTAGTCCCGAATCTTCCGAAATATTGTGGATTGTAGTAGCAAACAAACCCATTGAATATACGGAGCCTGTCCATAAAAAATCAGAGTCAAAACATACACCAAAACAATATCATTGCAAAGAATGTCCAGCCAAATTTTTCAAGAGTTCCGCTCTGTCGTACCACATGGGATTACATGGTGGAGAAGGCGAACATAAATGTAAGAAATGTAGTTATGCCGTCAAAAATGTTGGTAACCTAGCTAAACATGAGATATTACACGAAATCGAAAGTAAACCGGTCGATCGGTGCGATTATGATTCCGGTGAAGATATGGATTACAAAAATGTTCCTCTCTCTGGAACAGATTTATTCCAAAGAAAGACTGAAGCCATTAAAAGAGTATTGACTGACAAAGATAAACTGGTTAAACCAAACGATCATTTTCCGCCTGTGCTCCAAGCCGATCCACAGTTCGGTTACCTCATGCACGGAAATCCCGAATTCATTTACCctacgtatttaaaaaatggaCGCCAAAAAGAAAAAAGGTATAAATGCCACAAGTGCCCATCAGCCTTTGAGAAAAGAGAACAGTACAAGATACACTTATCTCTCCACGGCTCGAAACAAAGGTACAAGTGCGAATTGTGCGACTATTCTGTAAAGTATTATGCTAATTATGTGCAACATATGAGAAAACACCAGATGAACGATGAAGCACAAGCCGAAAGAAAGAAAGGTAACAGTGGTTATACCGAACCGGATAATAATGAAGATGAGAAGAAAGATGATAGCGGAGATAACATAAAATTAGCAATCAAAACAATGCCAAAAGGCGCGCCTAAAACAGATTTCCAGCAGTTTTCTATAAGAGATCAGCAAACTCTGAGACTATTACAGCGAAGGAGGTCAATGAATGCAGGCGGCAAAGACTCGGGCCCCAACGAAGCATCGCCAGCGAAAGAGCGCAAATTACACATGTGTCTCCTGTGCCCGTACACCAACCAACGTCAGGACGCCCTGAACAATCATTACAGGCGACACGACGCCGCCGATATCCTGAATGTCGGAAACCACAAATGTTCTTTCTGCGACCTAGTCGTCGTTCAATCGCATTTCCTACGTGATCATTTAAAAACTCATTTCAGTTATCATAAAAATCTGACTCCTGAATGCTTCGTGGCTAATGAAAATGTAACTTTCACAATCAgcaaaattgatgaagaaagCGAACCTCTTGATCTCAAATTAGACGTGAAAAGcaaaattgtatacaatgaagaaaaaatgtttgtaaatatCAAAACAGGTGAAGTTGTCGTAGAATAA
Protein Sequence
MGLQYAERDIVSCNSDSNDAGSSHADLHRDAAHDGPGQFSPGSATDDPKSLKQSRKPPRPIPQLIPLNSSTPNQKAPGEPPAKKFKESTTSELVGKFENLPEDITLIPVNVPAKETTVRKKNNSFFDKLKERLLTETGEEGSLKCKNCGFESKCLSEHSVHEKNCSTQANRITMSAALPSKGSTRCQNCRHRCKSSADLYVHMQTCGKKNNIPTDNVTESKFNNEASTSQFEKEAEPHPMENVVFVWNNINQDTNKFDRPLDININDDSTVTDLNRHYDTETVDENEGMNLSPNSLSLGKNVYKCPDCKFWAATASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAVPVLNENGENEFHYIDPNTTMDASMEVDESYGNEATDMMHVSYEMQPLNLQTQSAEKYLMDNRNMESKKPKKTLWKCKKCNYKDPSKEALLEHVRQHSREGGDDAPPSNNKKLENAPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGIIKVITTVKPKPDLSQVPGNEEVYSDLCTKCPFKANDKKQLQEHLQQHQPSPESIFKCYFCPYFVKDEQDLIQHLLLHGITDPEDYISKAMGCKSPLPDRILPNPDISTHPGTSTKRHKCTECPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIHPSADRKKNESEAELEANAACQSRLDKSDFAEDIPFVWVSARNEFHKMYKCRYCSYVNSQKCKLPNHEKIHCLEFENSDVIIYKCLECKFTCDDPEKGAEHSKKHGLLYGRIYSYVEDDIPDEDQIAKLRRVIEQEKALEESTKEENTATDPPENKIMFYCSKCPANYFSESEIKVHEKFHDRSLEHKCKTCEFSVSEQTELTAHETMHSDDYHIRTNMHKFVYNYHSLYKPPRLETIRSPESSEILWIVVANKPIEYTEPVHKKSESKHTPKQYHCKECPAKFFKSSALSYHMGLHGGEGEHKCKKCSYAVKNVGNLAKHEILHEIESKPVDRCDYDSGEDMDYKNVPLSGTDLFQRKTEAIKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGNSGYTEPDNNEDEKKDDSGDNIKLAIKTMPKGAPKTDFQQFSIRDQQTLRLLQRRRSMNAGGKDSGPNEASPAKERKLHMCLLCPYTNQRQDALNNHYRRHDAADILNVGNHKCSFCDLVVVQSHFLRDHLKTHFSYHKNLTPECFVANENVTFTISKIDEESEPLDLKLDVKSKIVYNEEKMFVNIKTGEVVVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00790785;
90% Identity
-
80% Identity
-