Hato033832.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023306.1:4666705-4693998[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.3 4.8e+02 2.7 5.8 1 21 601 621 601 623 0.92 2 10 0.46 42 6.1 0.8 1 23 656 678 656 678 0.96 3 10 0.076 6.9 8.5 1.8 1 23 683 706 683 706 0.94 4 10 0.00074 0.067 14.8 0.7 1 23 711 734 711 734 0.96 5 10 0.12 11 7.9 0.1 2 23 748 770 747 770 0.88 6 10 1.3 1.2e+02 4.7 2.1 2 23 794 816 793 816 0.95 7 10 2.8e-05 0.0025 19.3 1.1 1 23 831 853 831 853 0.93 8 10 0.001 0.092 14.4 0.6 1 23 858 880 858 880 0.98 9 10 0.00069 0.063 14.9 6.5 1 23 885 907 885 907 0.97 10 10 0.00058 0.053 15.2 3.1 1 23 913 936 913 936 0.97
Sequence Information
- Coding Sequence
- ATGACGCTGCCCCATTCCAACGCCGCCGCTGAGGGAGTGTTCGCCATGGTGACGGACACGAAGGCCAAGAAGCGTAATCGTATGGGGAGCGACACTCTAGACTCCATCTGCGTGGTGCGCACTGCTATGCGGCAAAAGAAGATAGCGTGCTACCAGCACAGGAAGCATGGCACAGGGAcgaattgtctttccaccattatatcccctcaaagtggaaataaaataaagaACAAAACCCCCGTAAGTTTGCTCCACCTGAAACTGCCCCCAGTAAGGCTGAACATCTGCACACCAAAGAACAATACAGTTTTCACTTACATTTGCCCGGAAGAACTAGAAAATTCTGTTCAAGTGGAAGATAGCATGTTGGAAAAGCTGCCCAAAAATACTTCAGAAGACATTAATGTATCTGAAAAAATAGATGTTGATGGTATAAAGCAAGAGGTAATTGAAAATACAAGTCATAGcgaagaattatttaaaatcgaATTACATTGTGAAGACTATCATGTTACAGGAGTGTCGGAAACCCTTTTCCAAAATAGTAACACTGAATCCGATGACATCACACAAAGTAAACTAGTCAATGATACCATTTCAAATGCTAGGATAGGTGAAACAGCAaatgtaaaaagaaataaaactaaaagaGACAGTAAAAGTAATTTGAGTGCAGAAGCAAGTAACACCAATGGTAAAAATAAGCTGCGAAACAAATCTAGAGAACTGAAAAATAGTCAACTGGTACTAGATGTTGATGATACTGCAAAAGATAGCAACAAAACTGGAGTAGTTGAAAAATTGGGACGTCACATAATTTCAACAAAAACATCGAATGAATCAGAATCTGAGCTCGATTCTagtaataaaagtaataaaccGGGCGATACGGACGTTGAAATAATAGCCTGCGACGATGAAGACAGTAAAAATAACGATGTAATAGAAATAGAAGACGGAATAGATTACCCCGAAGACGCAAGTCTCAACAGCGACGACGATTGCGATGATTACTTGTATACGCCCccaaagaaaagaaaacaaaaattgacaCTCGATGAGCTAGCAAATATAACACTAAGTGGCGATGATTTAGATGATGATTATTTAGCTGAACACACCGAATCAAAAACAAAGAAAGACGATTTCGATACATTTGCAGCAGAGAAAAGGAttgcttataaaatatttaccatgGGCAAAACTCTAGATTCACTATGCGAAAATTGGGAAGTTACGTCTCTAATAGATGTAGGTATACCGAATGTATCAAACGATGAAATTAAGAAATTCACTActcaatttttttgtgattggaAAGCGTCCGACAAAGTCAATGCCAATACGTCGAAATTTTCGAAGAAAAGGAGTTTCGGTGCTAAATTGGCGTGCATGCGTTGTGATTTAGATGCATTAACAGATAAATGTGCCAAGTTAGTAGAAGGTTATAAAGATGGCCTAAATGATTCTGATCCTAAATTAAGGTTGAAAGCAGAGTTAATGCAAAAATTCAATTCGTGGGGAGAACTTAGAGCAGAGGATGGCTTCATATTTGACAAGGATATTATAATAAACTGTCTCGACATGGTCAGTGAGCGATTGATCCGGCAGTTGATAAATTTATTACATGgAGCAAAAACCCTAAGTCCAGGCGCAGCGGTAATACTAAAAAGAATTCAAAACAAACAGAACGAAAACCAATACGAGTCCATATTCAACATTGAGTACTTGACCACAGAAAAGGAAATGCTAGAGGAGTTTCAACGGCGGAAGACTTATGAGTGCTACGTCGAGGCCAAGTTCAAATGTGAAGTCTGTTATCAGGGGTTTAAGCACGAAAGGCTGTTGGATTATCATAAAAAGTGTCATGATGAAAGCAACGGTTCAATCTCTTGTACTATCTGCCACGTGCGACACCATTCCCGGCGCCGGCTGAAAAAACACATGAGCGCTCACGTCGCTGTGTACAAGTGTAAACTATGCCCCCTCGTTACATACTACAGGCTTTCGATGATAAATCACTACGAGCAGCACAACGGCACATTATATAAATGCGAACCTTGCGGTGGAACTTACAAAAGCAAGTCAGCATTCCTAAGTCACCAAACGCACATGCACCCGAGCGGCGCGCACGTCTGCACCACCTGCGGTCGTGGGTTCATTTCCCCGCTCGGACTCAGGACGCATATCACTAGGAAACATCAGGGTGAGACGCCGTCGGTCGAGGATGGTAGCGGCGTGCGGTGCGAGGCGTGCGATCTCACGTTCCCTTCGCAAGAGGCGTATTTACGACACGACCGGTCTCTGCACGGTGCTCCACCCGTTTACAAGAAGAAAAGAGCTCCCAGATTTCTAAAACCAAGAAAGAAACCAAACATGACTTGCACAGTGTGCAACACAGTGGGTCACAGCTACGGCTGGCTGACGCATCACTTCAGTACGGAACACCCCACCGTAGACATGGCCGCGGCGTATGCAGACAAACGGACTTACCTCTGCGACGTTTGTGGCAAGGGATTctcgcaCAAGTACACCCTACGAGAGCACATAGGCTACCACACGGGCGTAACATTCCCGTGTCCGACTTGCTCTAAGCGTTTCCTTTCAACCGCCGCCCTTAGAAGACATAGGCTCACCCACGCACCGCCCGGCTTTTGTTGCGAACGCTGCGGCAAGAAGTTCCATTCATACCCCAATCTGTACAATCATATGAGGAGTCACATCGGCGACCGGCGATTCAAATGCAACATCTGTGGCAAAGGGTTCCTGCACCGTTGCTCCTTAAAGGAACATATTCGAGGGGTCCACAACCACGAGCGGCGCGTCAGGAAACGAGGTGTCGTGGAGCCTCAAGGGGTCACTGAAACAGGGATGCTAGGGGTCCCTGAAATGGAGGTCAAAGGGGTCTTGGAAAATGAAGGAGAGATGGTGTAA
- Protein Sequence
- MTLPHSNAAAEGVFAMVTDTKAKKRNRMGSDTLDSICVVRTAMRQKKIACYQHRKHGTGTNCLSTIISPQSGNKIKNKTPVSLLHLKLPPVRLNICTPKNNTVFTYICPEELENSVQVEDSMLEKLPKNTSEDINVSEKIDVDGIKQEVIENTSHSEELFKIELHCEDYHVTGVSETLFQNSNTESDDITQSKLVNDTISNARIGETANVKRNKTKRDSKSNLSAEASNTNGKNKLRNKSRELKNSQLVLDVDDTAKDSNKTGVVEKLGRHIISTKTSNESESELDSSNKSNKPGDTDVEIIACDDEDSKNNDVIEIEDGIDYPEDASLNSDDDCDDYLYTPPKKRKQKLTLDELANITLSGDDLDDDYLAEHTESKTKKDDFDTFAAEKRIAYKIFTMGKTLDSLCENWEVTSLIDVGIPNVSNDEIKKFTTQFFCDWKASDKVNANTSKFSKKRSFGAKLACMRCDLDALTDKCAKLVEGYKDGLNDSDPKLRLKAELMQKFNSWGELRAEDGFIFDKDIIINCLDMVSERLIRQLINLLHGAKTLSPGAAVILKRIQNKQNENQYESIFNIEYLTTEKEMLEEFQRRKTYECYVEAKFKCEVCYQGFKHERLLDYHKKCHDESNGSISCTICHVRHHSRRRLKKHMSAHVAVYKCKLCPLVTYYRLSMINHYEQHNGTLYKCEPCGGTYKSKSAFLSHQTHMHPSGAHVCTTCGRGFISPLGLRTHITRKHQGETPSVEDGSGVRCEACDLTFPSQEAYLRHDRSLHGAPPVYKKKRAPRFLKPRKKPNMTCTVCNTVGHSYGWLTHHFSTEHPTVDMAAAYADKRTYLCDVCGKGFSHKYTLREHIGYHTGVTFPCPTCSKRFLSTAALRRHRLTHAPPGFCCERCGKKFHSYPNLYNHMRSHIGDRRFKCNICGKGFLHRCSLKEHIRGVHNHERRVRKRGVVEPQGVTETGMLGVPEMEVKGVLENEGEMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827567;
- 90% Identity
- iTF_00827567;
- 80% Identity
- -