Hato034609.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023307.1:4370644-4393578[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.23 21 7.0 1.1 1 23 290 313 290 313 0.93 2 10 0.025 2.3 10.0 0.2 2 23 320 341 319 341 0.95 3 10 2 1.8e+02 4.0 2.5 2 23 346 367 346 367 0.95 4 10 0.1 9.4 8.1 0.9 1 23 371 394 371 394 0.94 5 10 0.00042 0.039 15.6 5.1 1 21 397 417 397 418 0.96 6 10 0.0034 0.31 12.8 6.5 1 23 688 711 688 711 0.95 7 10 0.00011 0.01 17.4 0.2 2 23 756 778 755 778 0.94 8 10 0.00084 0.077 14.7 1.7 1 23 784 807 784 807 0.93 9 10 0.0012 0.11 14.2 0.6 3 23 817 837 816 837 0.98 10 10 0.14 13 7.7 3.8 1 23 843 866 843 866 0.96
Sequence Information
- Coding Sequence
- ATGAGAgtaattaaaacagaaaacccTGCAGTGTGCCACGGATGTTTGAGCAGCAACCGCGAGACTTCTGCTCTCGGGGTATTCGCAGAACTGCTCTTGAACCTCATTGGAGATCAGAAGCAGACCATATTTTGTACTATGGAAGATGTAAGATTCTGTTGGGAGTGTATGGCGGTActtaagaaattaaaatcatttcaaaatcaACTGAGAAACGCCCAAACTGCCCTGATGCAAATGGAGACGCTCTGTGACCAGGATTTCAGTCCTATGACACTGTCGAAATTAGAaaccatagaaaaaaattaCTACGACCAAGATTACCAATATTTTGAAGAAACAAATCAAAATGGTACACTCTTAAACATTGAAGAAAGTAAAGATAATGCCGAAGCAAATATTACTGACTGTACGAAAactataaaagaagaagaatatacTGAATTTGACTATATTGATAACAAGTCTGACCAAAGCGAATCAAGCAATGACATAACTAAATTCCACTATGAATATCAGATTGAGATCCCAAAAACTGCTGTAAAAAATGATAGTGAGTTACAAATAAACCTGAAATCAGAGAATGATTGCAGTAGAAAGCGGAAACTAGATGTATCAAGTGATGAGGACTTCTGTCCGGGTGACATGAATAATGACGAAGTCAGTCCAAAAAATGTCCAAGCAAAGAAGAGTAAACCGAAAAAACCAGAATCGAAGTATAAACATGCTATGACAGTAATAAAAAAAGAGAAGTACGATTCGAGCCAAGTGGATAATTATTTCACAACGATTACATTTGGGGAGGCAGACTACGAAGAGCATATCCTGAGTAAAGACAGAAACTGCAGGTCGTATTCTAGGTTTAAGTACAAATGTAAACCGTGTGAACGGGGCTATAATAGTATCTTTGACTTGAAACGGCACAATAACCTGAACCATAATAAGAATGCAGAATGGAAATGCGTAGCGTGCAAAAAGGTAGTATCATCCCTGGAAGAGTTGGAGAAGCATTGGCACGTGCACACCCCGGTAGCTAAGTGCAACCTGTGCGGAGACGTTTGCAGGCCGTTCGAAATGCAGAAACATCTCAACAAGACTCATACCAAGGAATATGCCTGCCAGTACTGTAAAATGAAGTTTGGACAAATATTTGAGTTCATCGACCACTACAAAGGAACGCACCAGAAATTTATTTGTGACTACTGCAACAGATGCTGCAAGACCAAAAATTTACTACAGAAGCATATTAGACTGGTCGCGTGCGGTGGCCTCGAGAGGTCCGAGCCGCTGACCTCGACCATGGGCGTGGCACAGGGATCTTCTGTCTCTAACATAAGCTTCTCTCTGCTCTTGAACGATCTTCCGGATGCTGTGactgcagctgaaatttttatgtACGCGGACGATGTCGCTGCGGTCGTCACGGCATCCAACGTGGATCTGCTGGAGCAGAGTTTGAACGACACGACATCCCAATTGGCGCAGTGGTTCGGGGTGAACGGGTTGGCCCTTAACCTATCCAAAACCCACTTTGTTCACTTCTGCTTGTCCGGCCACCAGACACGGTCGCTAAAAGTAGAAGTGGAAGGAAAACGGATAGAACAGTTGAGGACCACGACCTTCCTCGGTTTCGAGATCGACCGGAGTCTGACGTGGGAAGCCCATATTGACAAGTTGTGCGGCAGGCTGGGGAGCGCATGCTTTGCTCTGAGTCGAGTCGCCAGACTGGTGCCTGCTGAGGCGGTGAGAAGTTGCTACTTCGCCACGGTGCATTCTTTGCtgcaatacggtacggaattaTTTGGCAGGGCCGCGGACTGGGAACgtattttcattttgcaaaaacgcGCCGTCCGCGCCATTGCCAGAATCCCACAGGACGTTTCTGCACGCCCATATTTTAAGAGGTTTGGTATATTGACATTGCCGGCACTCGTCATTTTTCAAGTCGCGGTATATGTGAGATTGAACCAGGCCTCTTATAAATTGCGCAATAATGAACGTTTCAAAGGCAAGTTAGCAGAGCTTCCACGCACGCTGGAAAGGACTCGCCACAACCCGTTCGTGTGTAAGAAATGCGACCGAAAGTTTACGAACAAGAAAAGATTGAAGTACCATCATACCGTGTACCACCCGGACCCCACCGAGCGTCCCGAGCTGGCGTACTGCGTTGAATGTAACCAGCAATTCCCGTGTATAGCCAAGTATAACTTCCATTTGTATTATTCGCCCAAGCACACAAATATCAAGCCAACTATTCCCGTACCATGTCCCGATTGCGGCAAAATcttcaaaaagaaaatatatatgaACAACCATTACAACCTGGTTCACCTCAAGAAAACTAACCATTACTGTGAACTCTGTGATAAGTATTACGCTCACAAGTCCGCATTACAATTGCACATAACTGAAGTTCACATGAAGATTAAACCCAAGAACAAAATATGCGATTTGTGCGGCAGAGGCTTTTCTACAAACCGCATATTGCTGAACCACCGGCGGACCCACACGGGGGAGCGGCCCCACCAGTGCCCCTTCTGTAGCGCCGCGTTCATACAGAAACAAGCGATGCGGACCCACTGTCGCACGCAACACAAACACGTCATGTGA
- Protein Sequence
- MRVIKTENPAVCHGCLSSNRETSALGVFAELLLNLIGDQKQTIFCTMEDVRFCWECMAVLKKLKSFQNQLRNAQTALMQMETLCDQDFSPMTLSKLETIEKNYYDQDYQYFEETNQNGTLLNIEESKDNAEANITDCTKTIKEEEYTEFDYIDNKSDQSESSNDITKFHYEYQIEIPKTAVKNDSELQINLKSENDCSRKRKLDVSSDEDFCPGDMNNDEVSPKNVQAKKSKPKKPESKYKHAMTVIKKEKYDSSQVDNYFTTITFGEADYEEHILSKDRNCRSYSRFKYKCKPCERGYNSIFDLKRHNNLNHNKNAEWKCVACKKVVSSLEELEKHWHVHTPVAKCNLCGDVCRPFEMQKHLNKTHTKEYACQYCKMKFGQIFEFIDHYKGTHQKFICDYCNRCCKTKNLLQKHIRLVACGGLERSEPLTSTMGVAQGSSVSNISFSLLLNDLPDAVTAAEIFMYADDVAAVVTASNVDLLEQSLNDTTSQLAQWFGVNGLALNLSKTHFVHFCLSGHQTRSLKVEVEGKRIEQLRTTTFLGFEIDRSLTWEAHIDKLCGRLGSACFALSRVARLVPAEAVRSCYFATVHSLLQYGTELFGRAADWERIFILQKRAVRAIARIPQDVSARPYFKRFGILTLPALVIFQVAVYVRLNQASYKLRNNERFKGKLAELPRTLERTRHNPFVCKKCDRKFTNKKRLKYHHTVYHPDPTERPELAYCVECNQQFPCIAKYNFHLYYSPKHTNIKPTIPVPCPDCGKIFKKKIYMNNHYNLVHLKKTNHYCELCDKYYAHKSALQLHITEVHMKIKPKNKICDLCGRGFSTNRILLNHRRTHTGERPHQCPFCSAAFIQKQAMRTHCRTQHKHVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -