Basic Information

Insect: Hypomecis atomaria
Gene Symbol: -
Assembly: GCA_964007245.1
Location: OZ023279.1:26250913-26266680[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.7 3.4e+02 3.2 6.3 1 23 249 271 249 271 0.97

2 9 5.1 4.7e+02 2.7 0.2 2 23 293 313 292 313 0.93

3 9 0.00068 0.062 14.9 2.5 1 23 321 343 321 343 0.98

4 9 0.0012 0.11 14.2 0.2 1 23 367 390 367 390 0.95

5 9 6.7e-05 0.0061 18.1 1.1 2 23 401 422 400 422 0.96

6 9 0.0014 0.13 14.0 2.5 3 23 430 450 428 450 0.96

7 9 0.0001 0.0095 17.5 2.3 3 23 458 478 457 478 0.97

8 9 1.3e-05 0.0012 20.4 1.2 1 23 484 506 484 506 0.97

9 9 0.001 0.093 14.4 0.1 1 22 512 533 512 533 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.7	3.4e+02	3.2	6.3	1	23	249	271	249	271	0.97
2	9	5.1	4.7e+02	2.7	0.2	2	23	293	313	292	313	0.93
3	9	0.00068	0.062	14.9	2.5	1	23	321	343	321	343	0.98
4	9	0.0012	0.11	14.2	0.2	1	23	367	390	367	390	0.95
5	9	6.7e-05	0.0061	18.1	1.1	2	23	401	422	400	422	0.96
6	9	0.0014	0.13	14.0	2.5	3	23	430	450	428	450	0.96
7	9	0.0001	0.0095	17.5	2.3	3	23	458	478	457	478	0.97
8	9	1.3e-05	0.0012	20.4	1.2	1	23	484	506	484	506	0.97
9	9	0.001	0.093	14.4	0.1	1	22	512	533	512	533	0.96

Sequence Information

Coding Sequence: atggACGATATTTGTCGTTTGTGCTGTTCTAAAAACTTTGTCAATAACAGCATATTTGATGAAGAAAATGCATTGTATCTTAAGATGTCTCTGTATCTGCCGATAAAGGTTTTTAAAAACGACCAGCTGCCTCAGAAGGTCTGCGACAAATGCAGCTGCAAGGTGAACGATTTCTATCAATTCTGTAATGAAACTATTGAAGTACAAAACAGGTTACGTTCCTATCTCATATCCAACGGCTTGGTTTCTGATCATGTGGTAGATCTTACTCGGGTAAAAGACAATGTGTCACCATTACCGAAAGACAATGCCTGCGAACAAGGTACACAGACAGACTGGGAAATATCAGAAAAGTCTAACAACATTACGAATAATCAAACCGTACAGATTAAACAAGAACCTGAGACGCTATCACCTATTAAAGAAGAGAATACGTACGATGACTGTATGGACTCATATTCGGACAACAGTGACAACATTTCGTTGATAACtttaaaaaagaagaagagGAGTAGAAAATCTGAAAACGGAGTAACCAAAAAGCCAAGAAAGCGGAAAGCTAAGATAGATGAATTGGAAACGTTGATGAATTCATTGCCAGAAGGGACCAATTTGTCTGTAGTAGAGACTGATGTGCCGGTAAAGCAAGAGATTTCTAACATTCTACCGAATATGAATATCCGTGAGTTCAATTTGAGCGTAGACATGAAACATGTAAAGAAGGAAGTTGAAGAGCTAGAGACGTTCAACTGCTGTATTTGTTTGATGCAGTGCTTTAGCAAAAATGAGATGATTCGCCATTATAGGTCGCACGAGGCGGACTCGGGCCCGGTGgaggcgccgcccgcgccgccgccgcccgacgTCGACCCGCTGCGCTGTCTGCGTTGCCGCAAGACATTAACAGCGGGCGAGTGGGGCGCGCACTGGCGGCGGCACTGGGAGCGcgaccggcggccttatcgctgcgCTCTCTGCGAGAAAACCTTCCGAGACCCGCATCAGACCTTCAAACACGGGTTGACACATAAATACAGCGCAGAAAGCACAGGCGGGGCGGCGGGGGAGGAGGGTGCGGGGGAGGCGCTCAACAAACGTTTCATATGCGACCTCTGTCCAGAGAGCTTCGTCTATATGAGGTACCTGCAGGCGCACCGCACCCGCGCGCACCCCGAGTCCGCCACGCGCGCGCTCCTCCTACGCTGCGCCGTCTGCGACCGCCAGTTCGCGCACCTCAACTCTCTCAGGAGGCACCTGAGGGCACACGAGGGCACGAGGGACCATCTGTGTAATGTCTGTGGGAAGGCGCTGTCGAGCAGAGAACATCTCAAGTTCCATATCCGGATACACACGGGGTACAAGCCCAACATCTGCAAAACATGCGGCAAGGGTTTCGTAAAGAAATGCAACCTGACTCTACACGAGCGCGTCCACTCCGGAGAGAAGCCGCACGTGTGTTCCTCCTGCGGGAAGGCCTTCAGCCAGCGGTCCACGCTGGTCATCCACGAGAGGTACCACTCGGGAGCCAGGCCGTACATCTGTCCACATTGTAACAGAGGATTCGTGGCTAAGGGACTGCTGTCGATGCATTTGAAGACTACGTGCATTTAG
Protein Sequence: MDDICRLCCSKNFVNNSIFDEENALYLKMSLYLPIKVFKNDQLPQKVCDKCSCKVNDFYQFCNETIEVQNRLRSYLISNGLVSDHVVDLTRVKDNVSPLPKDNACEQGTQTDWEISEKSNNITNNQTVQIKQEPETLSPIKEENTYDDCMDSYSDNSDNISLITLKKKKRSRKSENGVTKKPRKRKAKIDELETLMNSLPEGTNLSVVETDVPVKQEISNILPNMNIREFNLSVDMKHVKKEVEELETFNCCICLMQCFSKNEMIRHYRSHEADSGPVEAPPAPPPPDVDPLRCLRCRKTLTAGEWGAHWRRHWERDRRPYRCALCEKTFRDPHQTFKHGLTHKYSAESTGGAAGEEGAGEALNKRFICDLCPESFVYMRYLQAHRTRAHPESATRALLLRCAVCDRQFAHLNSLRRHLRAHEGTRDHLCNVCGKALSSREHLKFHIRIHTGYKPNICKTCGKGFVKKCNLTLHERVHSGEKPHVCSSCGKAFSQRSTLVIHERYHSGARPYICPHCNRGFVAKGLLSMHLKTTCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00034207;
90% Identity: iTF_00826301;
80% Identity: -