Hato035102.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypomecis atomaria
Gene Symbol
-
Assembly
GCA_964007245.1
Location
OZ023307.1:12020044-12076177[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0055 0.5 12.1 5.8 1 23 517 539 517 539 0.99
2 11 0.64 58 5.6 0.2 1 19 546 564 546 566 0.95
3 11 0.82 74 5.3 2.4 1 23 572 595 572 595 0.98
4 11 0.75 68 5.4 4.2 2 23 603 624 602 625 0.94
5 11 1.7e-06 0.00015 23.2 0.6 2 23 631 652 631 652 0.97
6 11 0.00029 0.027 16.1 4.0 1 23 658 680 658 680 0.98
7 11 0.00012 0.011 17.3 0.2 1 23 695 718 695 718 0.94
8 11 0.05 4.6 9.1 0.1 1 23 724 747 724 747 0.89
9 11 0.16 15 7.5 0.3 1 12 756 767 756 769 0.88
10 11 5.5 5.1e+02 2.6 0.1 14 23 800 809 798 809 0.87
11 11 0.0013 0.12 14.0 0.3 1 23 815 838 815 838 0.95

Sequence Information

Coding Sequence
atggctGAAAAAAGGAAAAGAAGTCAAAACGTCACGATCGATGAAAAAGACAGACTTGTGAAATTGCTCATGGAGCATAAGGACacaatattaaacaaaaaaactgaTGGGACAACAAACGAAGCGAAAGTAATTGCTTGGAAAGCGGTTGCAGACTCTTTTAACACAACTGGGTCAATTTACAGatCAAAAGAATCCCTGATGAAGATTTGGGAGAAGTTAAAAAGTGATAGTAAGGTTTACTATACAGCTTCCAGAAAGGATTCGACGCAAACAGGAGGAGGACCTTCAGTTATTAAAATTGATCCCATTTTAGAGCAGGTGTGCGCCATACTTGGCCGGGGCTGTACGGGTATCATAGGTGTGCCAGACAGTGACTTAGTGGAGGATGTTGTGGTCTCTGAAGATAGCCAATCTAAAGTTTTCATGATAAATCTATTAAATTCTGAAGAGGTGTTGCCCAGTGAATCAACTGTTGTGCAATCTAAACAAGAACCCTCTGATCAAGATGAGTTTGCAAGTGAAGACATCATTAAAAAGACACCTTTGTGGTCTAGAAGACGACCTGTACCCTCGCAAACTAATGAGAGAACCGAGGTTGTATCTTCTCTCTGCAATAGCTTCAAAGAAGTCAACAGAAAAAAAGAAGACGTTGAAGACTTGAAGAGGCAATTGCTCCAAGATGAGATAGATTTTAAGAGAAAATTATATGACTTACAACTGCTATCAGCCGAGAAAgaacttgaaataaaaaaagaagtacTCCAGCAAATAAgagAAATAGAAGATTTCAAACTAGATATAGAAGTAGAAAAACCCCTGTGCCGATGTTGTTTATCCACAGAAAACAGAATGTTGGACGCGACGAAAGTGCGCCAGTATTTCTTGGATTTAGCCAATATTGACGTGATATCGTCAGACGGCCTGCCATCATGGATCTGTCATGAGTGTGAAGCGCTCCTCAAAAAGGCTGTCCATTTCAAGTACAAGATGATTCGCTCGCACGCAGCTCTGTACCAGTACATCACTAGGTGTGCTCCATTCCCAATAGCTGGAGGAGACCCCGAGTTGTCTCGACTCTCAGCCCCACAACTTCGCCCCTCACAAGTACTCACGTTTGATTCGATGAAGACCAAACTCGGTTTCCACAAGGTCTTACAGCATGAGAGTCAACAATCAAAAATGGAGCCCATACCAGAGCTACCTTTAATACTGAACGAGGAAGTCAAGATGGAAGACCACGGCACTGATTATGAAGATGACCTGCCTCTGCATGAATTTAgATCAAACCATGTGACTGAGGAGCTCATCAGCAATGGCGATATAAAGACTGAACCagaagagaagaagaaaaagaagaagaaagacaAAGATGCCAAAGCtaagaagagaaaaaaaaaAGAAGATGAAGAAGAAATGCCGCCACCAAAGAAATGTATACGAAAACCGGTAGAAATAGATCCGgagaaaattaaaattctcACTTTGAATCCTGAAGAACAAGTCAGGCAAAGAGAGGAGGAGAGCAGAGCAAGTCTGAAGTTCCCGTACCAGTGCACGTTTTGTTATAAAGGATTCAATTTCGATTCCAAATTACAAAATCATATGCACAAACATAGCCCGgaGCGCGGTCCATTCTCGTGCGCCCTCTGTCGGATGTATTTCCCCACCGCGTACAGCTACACGGTGCACTCTCTCTGTCACACGCGCCGGTACCAGTGCCTCAAGTGTGGCGTCAAGATGATCGATAGGAACAgcatttatcatcattatagAACCCAACACGAGGgcatttctacaataataacatGTAACTTGTGTGGGAAAATATCTAGCAACTACAAGACTCATCGGGGCCACATGCGGAACCATCACTCGGGCGAGCGGCCGCGGTGTGACCAGTGTGGAAAAACTTTCGTCAACAAGGACTCGCTCACTGAACACTTACAaatACACGAGGGCGTGAAGAACTACGAGTGCTCCGTGTGTGGGAAACGATGTCGGACTCGGACGCAGATCAAACAGCACCAGCTCAAACATGCTGACACCAGGGACTACTACTGTGTCGAGTGCGACGTCAGacaCATGTGTCCTCGCTGTCCCAAACGCTACGCCACCTCATCCCAGCTAGCTACCCACGTGGCGGTGGCGCACGAGGGCTCGCGTCCTCACGCGTGCGGCTCCTGCGGCGCCGCGCTTGCTACCCGTTCAGCGTTGAGGAAGCACACGGCCGCCGTCCATCTTGGACGCAGGCCGCATCCCGCGCACGTGTGTGATACTTGCGGGAAGGCTTTCAGGAAGGAGGGCGTAGAAATTTTCGTGTGGGTTCCACACGCACGAGCTAGCCTCAAGCTTACTTCGAACGAGGGCTTCAATGATCAATCTGATGACggtAAAAGTGTGTTAACGAACCATATCCGCACACACACAGGCGAGAAGCCATTCGTGTGCGGCGCGTGCGGTCGAGCGTTCTCACAGCGGACCGCAATGCGGACGCACTATACGCGCGTGCACTGTACTAGCAAGGCGAAGCCCGAGGCAGCCGCGGCGCGGGCCTTCGCCCCCAAGCAGGAGCCTGTAGCCGCGACGGCCTGGCCGCCAGAGGAGCTCTTCTACGTCACCGCTGGACCCTAG
Protein Sequence
MAEKRKRSQNVTIDEKDRLVKLLMEHKDTILNKKTDGTTNEAKVIAWKAVADSFNTTGSIYRSKESLMKIWEKLKSDSKVYYTASRKDSTQTGGGPSVIKIDPILEQVCAILGRGCTGIIGVPDSDLVEDVVVSEDSQSKVFMINLLNSEEVLPSESTVVQSKQEPSDQDEFASEDIIKKTPLWSRRRPVPSQTNERTEVVSSLCNSFKEVNRKKEDVEDLKRQLLQDEIDFKRKLYDLQLLSAEKELEIKKEVLQQIREIEDFKLDIEVEKPLCRCCLSTENRMLDATKVRQYFLDLANIDVISSDGLPSWICHECEALLKKAVHFKYKMIRSHAALYQYITRCAPFPIAGGDPELSRLSAPQLRPSQVLTFDSMKTKLGFHKVLQHESQQSKMEPIPELPLILNEEVKMEDHGTDYEDDLPLHEFRSNHVTEELISNGDIKTEPEEKKKKKKKDKDAKAKKRKKKEDEEEMPPPKKCIRKPVEIDPEKIKILTLNPEEQVRQREEESRASLKFPYQCTFCYKGFNFDSKLQNHMHKHSPERGPFSCALCRMYFPTAYSYTVHSLCHTRRYQCLKCGVKMIDRNSIYHHYRTQHEGISTIITCNLCGKISSNYKTHRGHMRNHHSGERPRCDQCGKTFVNKDSLTEHLQIHEGVKNYECSVCGKRCRTRTQIKQHQLKHADTRDYYCVECDVRHMCPRCPKRYATSSQLATHVAVAHEGSRPHACGSCGAALATRSALRKHTAAVHLGRRPHPAHVCDTCGKAFRKEGVEIFVWVPHARASLKLTSNEGFNDQSDDGKSVLTNHIRTHTGEKPFVCGACGRAFSQRTAMRTHYTRVHCTSKAKPEAAAARAFAPKQEPVAATAWPPEELFYVTAGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-