Hato037378.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023310.1:5603148-5606227[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.7 1.5e+02 4.3 0.1 2 23 217 239 216 239 0.93 2 9 0.00051 0.046 15.3 2.5 2 23 264 285 263 285 0.96 3 9 0.00015 0.014 17.0 0.7 1 23 289 311 289 311 0.99 4 9 0.033 3 9.7 4.9 2 23 318 340 317 340 0.96 5 9 2.4 2.2e+02 3.8 0.2 2 15 346 359 345 370 0.83 6 9 0.0036 0.33 12.7 2.0 1 23 381 406 381 406 0.94 7 9 0.63 57 5.6 0.7 2 23 415 436 414 436 0.95 8 9 8.4e-07 7.7e-05 24.1 0.6 1 23 442 464 442 464 0.98 9 9 0.00097 0.088 14.5 0.4 1 23 470 493 470 493 0.97
Sequence Information
- Coding Sequence
- ATGGAAGCCAAGACGTTCAGAGACATGGTAATGGCCACAGAAACACGACTGCTTCAAGCTCTCACTAACAGTTGTGATGATGCTACTCCAACAGCAGCTACACAGCCTGTGTTAGATGTGTGGATAAAAGAAGAGAAAGTTGTGGACAGTGATGATGATACTGAAGATGACTCTACTCCACCTACAGACGGCCTAAAATCAGATACAGAATCGACAAATCCAGACACTTTACTCGTTGTGCCCGACGTAAAGAGCATGTTGTGTAATTTCCCCCAAAAGTTGGGCCCTTCTGGAAGTACTCCCATTATAACTTCAGTCAAAACTGAAAAGAAAACGTCTCAAGATCGACTCGTAAAAAGAATAGTCGACAAATATGTTCTACCAAGTGTAAAACGCTTAACCTGCACCACGAAACTTAGACAAAACATCATTCTGATAATGCAATATTCATCCATCGTACCGTTCCGTCACAACAGCAAATATTTGAGCGACTACATTTGTTACTTCTGTGAAAACAGCTACGAAGAAATGATGAAATTGGCCGAACACACGGAGTCTCAACATGTGGGCAAAGTAAACGATGAAACTATACTAACTTTAATGAGAACTCGAGCGCACAAGTTGATAAACGCTGATATAAGCTGTGTCAAATGCAGATTGTGCTTAGAAGACGTCAAAACCATAGAAAATCTTATAGACCACTTGGTGAAAGTACACGAAAAAGTATACCACAAAACGGGTGATAAATCACATGGTATTTTAGGATTTGATTTAGGCACTGAAGAGTTGAAATGTCATTTGTGTAACGAGAAATTTGACAGCTTTAAGTTACTTAATTCTCATATGAACGGGCACTACGAAGCGTACGAATGTGTTGATTGTCAGCAAAAGTTTGCCCGTCTTTTGCAGTACAGAGCGCATTTAAAGACTCATGAGGGAAGAAAAGATTTGAAATGTGACCACTGCGGTGTCACTTGTAATACTAAAACCGGTTTGGAATTTCATATGAAGCGAAAACATTTGAATGTAGCTTTAAAATGTGAATTGTGCTCTGTTGTGTTCCGTTTTAAGGAATATAGGAAGAGAGATGAGCATATGGCAACAGTGCATGGTAAGCCAAAaccgaaaaacaaaattatatacaCATGTGATATTTGTAAAAATGAGAAAGTGTTTTCGAGTAACCATACCTTAAAGATTCACAAGTCGAATGTTCATAAAATTGGGGATTTATTACGTATACAATGTGAGATGTGTGATTTTGTGGCTCATGACAAGAGACGTATGAAGATACATATGGATTTGCATAATGGTGTCACAGGTTATGCGTGTGATATGTGTGGGAAGAAATTTAATAAACCCAATATGTTGAGGATTCATATGAAAATGCATGGGAATGATAAAAACTATGCTTGTTCTCTATGTGACGCAGCGTTTGTGCATAAAATTGTGCTGCAAATGCATATGAATAAAAATCATCCGGATTCAGACGTGACAGTATGA
- Protein Sequence
- MEAKTFRDMVMATETRLLQALTNSCDDATPTAATQPVLDVWIKEEKVVDSDDDTEDDSTPPTDGLKSDTESTNPDTLLVVPDVKSMLCNFPQKLGPSGSTPIITSVKTEKKTSQDRLVKRIVDKYVLPSVKRLTCTTKLRQNIILIMQYSSIVPFRHNSKYLSDYICYFCENSYEEMMKLAEHTESQHVGKVNDETILTLMRTRAHKLINADISCVKCRLCLEDVKTIENLIDHLVKVHEKVYHKTGDKSHGILGFDLGTEELKCHLCNEKFDSFKLLNSHMNGHYEAYECVDCQQKFARLLQYRAHLKTHEGRKDLKCDHCGVTCNTKTGLEFHMKRKHLNVALKCELCSVVFRFKEYRKRDEHMATVHGKPKPKNKIIYTCDICKNEKVFSSNHTLKIHKSNVHKIGDLLRIQCEMCDFVAHDKRRMKIHMDLHNGVTGYACDMCGKKFNKPNMLRIHMKMHGNDKNYACSLCDAAFVHKIVLQMHMNKNHPDSDVTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827466;
- 90% Identity
- -
- 80% Identity
- -