Hato009855.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023285.1:2660256-2679339[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8 7.3e+02 2.1 4.2 1 19 67 85 67 90 0.95 2 17 0.0025 0.23 13.2 1.0 1 23 96 119 96 119 0.94 3 17 0.33 30 6.5 1.9 1 23 121 144 121 144 0.97 4 17 0.092 8.4 8.2 4.0 3 23 170 190 169 190 0.97 5 17 8 7.3e+02 2.2 4.1 1 19 199 217 199 222 0.95 6 17 0.067 6.2 8.7 5.4 1 23 228 251 228 251 0.94 7 17 0.0011 0.1 14.2 2.3 1 23 253 276 253 276 0.96 8 17 0.021 1.9 10.3 0.0 1 23 316 338 316 338 0.98 9 17 1.6 1.5e+02 4.3 0.7 1 12 395 406 395 413 0.82 10 17 7.2e-06 0.00066 21.2 0.3 1 23 423 446 423 446 0.92 11 17 0.062 5.6 8.8 0.1 3 23 457 478 455 478 0.96 12 17 0.56 51 5.8 0.4 5 23 491 509 486 509 0.87 13 17 0.3 27 6.7 0.1 3 23 517 537 517 537 0.95 14 17 0.11 10 7.9 3.8 1 20 542 561 542 564 0.92 15 17 0.013 1.2 10.9 2.7 1 23 570 592 570 592 0.96 16 17 7.3e-05 0.0067 18.0 3.6 1 23 598 620 598 620 0.98 17 17 1.3e-05 0.0012 20.3 1.3 1 23 626 649 626 649 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCATCCATAGCTTCACCCATATACCTCGGCGACGGCGACTTAGTTGAGGAGCTCGAAATTCACGCACTGAAGCAAAATGCTGTCGATAAAGTTGGTGGGATTCTCTGCCACCTTTGTCATTCAGTATTTCCAAATAAGACAGATTTTGAATGTCATTATGCTCAGCATGGCACTGGCGCTGCAGAGCTTTTATACACCTGTGTGGTGTGTAAGAAACAGATGAATAACTATAACAACTTCCAGCGACACTGCTACCTCAACCATGTGGCAGAAAATACATTTAAATGTTTGTATTGCTACAAAAAGTTTGATACAACAAGTGTTCTCAACAGTCACATTTCTGCTGTACATGAATATAAATGCGACTCCTGCACTGACAAATTCCGTGCTAAAGAATGTTTAGAAGCTCACAAAAAAGTAGTCCACGGCAATGCCGCTTCAGTAGAGACCGAAGTTTTCATACCAAAGCAAACAGCTATTGACAAAATTGGTGGCATTTTATGCCACATTTGTAATACTACTTTTGGAAACAAAAAAGAGTTTGACATTCACCATTTACAACATGATACTAGTGAGGCTGGTATTGTGTACACTTGTGTGGTCTGCAAGAAACAGAATTCCAACTACTCGAACTTTCGTAATCACTGCTACCTCGTCCATGTGCTCAAGGATAAATTCCAATGCCAACACTGTTCTAAATCGTTCAAAAAACTCTGTATTCTCAATAATCACATTTCTAACATTCATGACCACAGCTGTCCTAACTGCAATGAGAAGTTTACTTTGAAAAAAGATTTAGAAATACACAAAAAGATTTTCCATACTAAGGAAAAGGGAATGGTAAAGAATGAACCACCATATGACTGTCTCTTATGTGATACAGTCATCAAAACAGTTGATGCTTGCCAGAGCCATATCGACGATCATTGTAAGATGCTGTACCCCTGTCCCATCTGTAAAGAAGTGCTGCCGAACAAGCCAGCAGCTGTTACACACTTGATGACCCATTTCGACGAAAAATTACCAAATAATATATCTACAGAACCAAGTTACGGTGTAGATAGTTCAATAGACATTTTAGGAGGCATTCTCTGTATCCACTGCAATACTCTGTGCCGTAATAGAGCTGATATACATACACATTTCAAGGACGAGCACAACAGCAAACCGGTCATTTACACATGCAACGTCTGTCAGAAACCATATGACAAATATGAAGTGTTTGGAAATCATTGCTACGATCATTTCGCTAGAGGAAAATTCCAGTGTGAGGAATGCGACAAGTCGTTCTCGCGGCTGTCGCTGCTGGTGATCCACACGGAGGCGTTCCACACGGAGTGCGCGGCCGACAAGCCGTACGGCTGCGAGCGCTGCGGCCGCGGCTACATGACCAGCCTGCGCCTGCAGGAGCACCTGCGCGTCGCGCACGCCGAGGGCGGCTCCAGGAGTCGTTGCATGAAGCCCGGCTGCTCCGCTCTATTCGACAAGCCCCGAGATCTGAGACAGCATTTGAAAAATCACAACCCGATGCTGGACAACTGGTGCAAGCAGTGCGGCCTTCAGTTCGCCACCTTCGCGGCGGCCGAGAAGCACCTGGACGAGCACCGCGACACGCAGCACTCGTGCCCCGTCTGCCGGCGCACCTACCGCGAGAAGCACCACATGGTCAAACACGTGCCCAGCCACTTCGAGGCCGTGCTCCACATCTGCAAGGTCTGCGGCAAGGGATACAACGCCAGAAACCGTCTCATACACCATTTAAAATCGCATTCCGAAGCTCACAACCACAAGTGTACATACTGCAGCAAGTCTTTCATGAAACCGTTCGAGCTAGAGCAGCACCTCAACACCCACACCGGCCTACGGCCCTATCCTTGCACGCTCTGCTCGAAATCCTTCACCAACTACTCCAACTGGAGCAAACATCTCAACAAAGTGCACCTGGTCGACAAATCTAAGATCAAGCTGTTGCACGTGCACCTGAAAACGGACGCCGGAGATGTTGCCGGAGACACTCGGAAGGAGAAGACTTCGCCGACCAAGACCGAGTCCGGGATCGAGTCCGCCGGCTCCGAGCTCTCCGACGTTCACAATTTCATGGACTCCGACGAGAGCGCCGACGACTGGACGGTCCAACACATTGAAAAACCGAGCAAAATCAAACGCAAAATCCGTACAACCGCTAGAGTTCCCGGAAAAACCGTATCCATCTCCGACACGGTGAAAGCCGCGATCGACAGAATCGATTCTTTGGATGAAAATCTCGACTGGGCGGCCGGGGAGATAGAAGATACCGAGTTTGCAGCTAGATATGAGGAAAGTTCAGAATTCAATGCAGAAATTGCGGCGCCCGAAGGCATGGACGACGAGCACGTTATTAAGGAAATAGTAGATCATATCGACGCCATGAGCAAGGACATGGTCGTCGGGAATCAAGTTGCAGCGGCGGACGGCGGCTCCGAGCTGGGAGAGGCCGATTCTGGGATACTGCAGTACGCAGATATGACTCCTGTGGATAATGCTATATTCGACGCCGTTCCAGAAGCGATGCAAACCTCGGCGAGCTACCCTCCCGGCCCCGCCGAGTACGGGCCCGACCTCAGCGAGAGCCTCACCAGCCTGGACGACCTCGCGCTACCGCACATCGATCCACTCCTCACCATCAGGCCGGAAAACGACGCCAAAATGTACGTCCAAGAGCCCGACAGCTACAGCTACCTGGACGCCGCGCCCGCCCAGCCAGACTACCCCTCGCAGCCCGCCTGGCCGCCCCACATCATCACCAAGGTTTACAACTACGACGAAACTAACGATGTCaacaatatGGATATATGCGGAAAAAAGTCAGACGAGCGAAAGCAAAATAATAACGTAACAGATCAAGGTGTAGCTATTGTGAATCATAAGGCTTCGACACAAAAATTGACTAAATTGATACAAAAACGCAAGAGATTGGCGCCTCAGCCACCGACTCGGTACGTAGCAGGCAGACGTGCAACATCAGATCCCGGGCGTAGCCACGGACGGCTCGGCGTGCGCGCTCAGTGGCGCCATGCTTCTAAATTACAATACGCCGTGTCCCGGCGCCGGGCGGCCGGCGCCAGCGCGACCTCCGCACGCATAATGAAATAA
- Protein Sequence
- MASSIASPIYLGDGDLVEELEIHALKQNAVDKVGGILCHLCHSVFPNKTDFECHYAQHGTGAAELLYTCVVCKKQMNNYNNFQRHCYLNHVAENTFKCLYCYKKFDTTSVLNSHISAVHEYKCDSCTDKFRAKECLEAHKKVVHGNAASVETEVFIPKQTAIDKIGGILCHICNTTFGNKKEFDIHHLQHDTSEAGIVYTCVVCKKQNSNYSNFRNHCYLVHVLKDKFQCQHCSKSFKKLCILNNHISNIHDHSCPNCNEKFTLKKDLEIHKKIFHTKEKGMVKNEPPYDCLLCDTVIKTVDACQSHIDDHCKMLYPCPICKEVLPNKPAAVTHLMTHFDEKLPNNISTEPSYGVDSSIDILGGILCIHCNTLCRNRADIHTHFKDEHNSKPVIYTCNVCQKPYDKYEVFGNHCYDHFARGKFQCEECDKSFSRLSLLVIHTEAFHTECAADKPYGCERCGRGYMTSLRLQEHLRVAHAEGGSRSRCMKPGCSALFDKPRDLRQHLKNHNPMLDNWCKQCGLQFATFAAAEKHLDEHRDTQHSCPVCRRTYREKHHMVKHVPSHFEAVLHICKVCGKGYNARNRLIHHLKSHSEAHNHKCTYCSKSFMKPFELEQHLNTHTGLRPYPCTLCSKSFTNYSNWSKHLNKVHLVDKSKIKLLHVHLKTDAGDVAGDTRKEKTSPTKTESGIESAGSELSDVHNFMDSDESADDWTVQHIEKPSKIKRKIRTTARVPGKTVSISDTVKAAIDRIDSLDENLDWAAGEIEDTEFAARYEESSEFNAEIAAPEGMDDEHVIKEIVDHIDAMSKDMVVGNQVAAADGGSELGEADSGILQYADMTPVDNAIFDAVPEAMQTSASYPPGPAEYGPDLSESLTSLDDLALPHIDPLLTIRPENDAKMYVQEPDSYSYLDAAPAQPDYPSQPAWPPHIITKVYNYDETNDVNNMDICGKKSDERKQNNNVTDQGVAIVNHKASTQKLTKLIQKRKRLAPQPPTRYVAGRRATSDPGRSHGRLGVRAQWRHASKLQYAVSRRRAAGASATSARIMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827330;
- 90% Identity
- -
- 80% Identity
- -