Basic Information

Insect: Hypomecis atomaria
Gene Symbol: -
Assembly: GCA_964007245.1
Location: OZ023310.1:4863439-4868079[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.84 77 5.2 0.5 1 21 56 76 56 78 0.74

2 15 0.00048 0.044 15.4 3.5 2 23 152 173 151 173 0.96

3 15 0.058 5.3 8.9 0.3 2 23 177 198 176 198 0.96

4 15 0.088 8 8.3 4.5 1 23 203 226 203 226 0.96

5 15 0.75 69 5.4 4.3 2 23 238 260 237 260 0.94

6 15 0.1 9.4 8.1 0.1 1 17 266 282 266 283 0.93

7 15 0.056 5.1 8.9 0.1 2 23 439 461 438 461 0.96

8 15 0.00082 0.075 14.7 6.1 1 23 484 506 484 506 0.98

9 15 0.083 7.6 8.4 0.4 2 23 511 532 510 532 0.95

10 15 0.00089 0.081 14.6 1.6 1 23 537 560 537 560 0.92

11 15 1.3 1.2e+02 4.6 2.5 2 23 570 592 569 592 0.90

12 15 5.7e-05 0.0052 18.3 1.4 1 23 598 621 598 621 0.97

13 15 1.4 1.3e+02 4.5 7.0 2 21 626 645 625 647 0.94

14 15 2.7e-05 0.0025 19.4 4.8 1 23 653 675 653 675 0.96

15 15 0.0015 0.14 13.8 0.3 1 23 684 707 684 707 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.84	77	5.2	0.5	1	21	56	76	56	78	0.74
2	15	0.00048	0.044	15.4	3.5	2	23	152	173	151	173	0.96
3	15	0.058	5.3	8.9	0.3	2	23	177	198	176	198	0.96
4	15	0.088	8	8.3	4.5	1	23	203	226	203	226	0.96
5	15	0.75	69	5.4	4.3	2	23	238	260	237	260	0.94
6	15	0.1	9.4	8.1	0.1	1	17	266	282	266	283	0.93
7	15	0.056	5.1	8.9	0.1	2	23	439	461	438	461	0.96
8	15	0.00082	0.075	14.7	6.1	1	23	484	506	484	506	0.98
9	15	0.083	7.6	8.4	0.4	2	23	511	532	510	532	0.95
10	15	0.00089	0.081	14.6	1.6	1	23	537	560	537	560	0.92
11	15	1.3	1.2e+02	4.6	2.5	2	23	570	592	569	592	0.90
12	15	5.7e-05	0.0052	18.3	1.4	1	23	598	621	598	621	0.97
13	15	1.4	1.3e+02	4.5	7.0	2	21	626	645	625	647	0.94
14	15	2.7e-05	0.0025	19.4	4.8	1	23	653	675	653	675	0.96
15	15	0.0015	0.14	13.8	0.3	1	23	684	707	684	707	0.96

Sequence Information

Coding Sequence: ATGAAAAGTAAGCAAAGGCACGTCATATTTTTACTAGGATCACCAGAAAGCCTGCGAACCTGCCCACGAACCAGCATCTGGCAATTGACGACTTCAGAACGTCAGAATGCTACCACTTTCCTGGAGCATACAACCGTTAAACCCTTCTTATATCAGCAAGCTAACTTCAAATGCTTCTACTGTGACGAAATATTCCCGGAAATTCAATCAGCTCTTTACCACACAGACTCTCACGCTATTCCAAATAGATCTGTTCTACTGAAGCAGTACCTACGCAAAGGCAAAAGAATGATTAAAGTTGATATATCAAATCTCAGATGCAGGATCTGCGAGCTAAAGTATTTAGATATAGATGAAATCCGAAAGCATTTGATAGATACCCACAAAAAGGAATTCAACGCCGCTGGAAACGGTCTTATGGCTTACGATCTCAGCACAAAAAACGGCCTCATATCGTGCCATAAGTGTTCAAAAGAATTCAACTCTTTCTTCTTATTGAATCGACATATGAACGACCATTTCAGCGTGGTCTGCGAAACTTGCGGATTAGGCTTCATGTCCCACCAACGTCTCGCAAACCACAGGATTGTCCATGAAAACGGGACGCACAAATGCGAAAAATGTCTTCAAATTTTCCCAACAAAACTCAAACTCCGCTACCACATGTTCAAGAAGCACGAAGTCTCAAACGTGAAGAAACTAAAACCCCTCAAATGTCCCCATTGTTTGGAACGGTTCTCAGAGCATTACAAAAAGATGACGCACCTGAAACAAGCTCACGGAATTGCCTTTACTTTTGAGTGTCCGACTTGCAAAGCTGTCTTCCCAACTAGAAGAGCTTTAACCGACACACGACTAAGCTTCACACGCGTAAAATCGAATGCCATAATCAGAAAGATTGCGATAAGCATAAGGCGCAGTGGCATCCTGAGTGGCGTGGTAGTGCTCCTGTTGGAGCTGTTCGAGGCGTTTCTTCAAATTCTAGTTAAATCCAATGTGATCACTGAAGTGTTTGCTGTCAGCATTTTCGACGAACAAAAGCCGGAAGACGCCAAGCAGCGAGAAACCACCAGCCTCTGGGAGCTGACCCTCTCAGAACGCACCAACGCTGCCCGTTTCGTCGAACTCACCACCGCTCGCCCTTTCGTCTACTGCCGCTACTTCTTCAAATGCTTCTTCTGCCATGAGCATCACTCCGACATCAGCAAACTTCTCCAACATACCTCCACCCACGATATCCCTGTACATTCCAAAATATTGAAAGAACTACTCAAGAAAGGCAGAAGAACTTTAAAGGTCGACATCTCCCAACTACAATGCCGAATATGCGTAAAAGATTTTGCAGAATTAGACTCGATAAGACAGCATTTGATTACAGAACATGGTATAGCGTTTACGCAATCGGGAAATGGTGTAGTAGCTTACAATTTGGCGACTCAAAATGAGTTGTTCTGCTGTCATATTTGCTCTAAGAAGTTCCAGACTTTTATTCTTTTGAACAGGCATATGAATGTCCATTTTAGTAATTCAGTTTGCGAAGTCTGTGGTGCAGGATTTATGACACACCAGCGTTTGATGCAGCACAAAGAGATCCACCAACCGGGCGGCTATCCATGCAATAGGTGCAGCAAAGTCTACACCACTAGTTCGAACCTTAAATTTCACGTTGAAAAGACTCACGAGGGGAATAAGAAAACTAGAATGTTGCGCTGTCCACAGTGCAGTGAACGGTTTACAGAGCATTTTAGAAAGTTGAAACATTTGAAGGAAGTTCATGGGATTACGTTTACGTATGAATGTGACGTTTGTAAGTTGACGTTTACGAGTAGACGTGCGTTAACTACCCATACGAATAGGCAGCATTCGTCGAAAACTCAGTGTGGAGTGTGTAAAAAGTGTTTTAGCTGCGTAACAGCGTTGAAAGTCCATATGCGTTGTCATTCCAGCGAAAGAGACTACCTTTGCGAGGTTTGCCAAAAATCGTATAGACATAAGAAGAGCTTGAAATACCATATGAGGAGCCATTTGAATGGTGATCAGTTTATCAAATTCACTTGTCCAGAGTGCAGTAGCGGGTTTCCTAGTAGGAATGATTTTAATAAGCACGTGAAAGAGTGGCATCCGAGtacgtattttgattttgttatcCATTAA
Protein Sequence: MKSKQRHVIFLLGSPESLRTCPRTSIWQLTTSERQNATTFLEHTTVKPFLYQQANFKCFYCDEIFPEIQSALYHTDSHAIPNRSVLLKQYLRKGKRMIKVDISNLRCRICELKYLDIDEIRKHLIDTHKKEFNAAGNGLMAYDLSTKNGLISCHKCSKEFNSFFLLNRHMNDHFSVVCETCGLGFMSHQRLANHRIVHENGTHKCEKCLQIFPTKLKLRYHMFKKHEVSNVKKLKPLKCPHCLERFSEHYKKMTHLKQAHGIAFTFECPTCKAVFPTRRALTDTRLSFTRVKSNAIIRKIAISIRRSGILSGVVVLLLELFEAFLQILVKSNVITEVFAVSIFDEQKPEDAKQRETTSLWELTLSERTNAARFVELTTARPFVYCRYFFKCFFCHEHHSDISKLLQHTSTHDIPVHSKILKELLKKGRRTLKVDISQLQCRICVKDFAELDSIRQHLITEHGIAFTQSGNGVVAYNLATQNELFCCHICSKKFQTFILLNRHMNVHFSNSVCEVCGAGFMTHQRLMQHKEIHQPGGYPCNRCSKVYTTSSNLKFHVEKTHEGNKKTRMLRCPQCSERFTEHFRKLKHLKEVHGITFTYECDVCKLTFTSRRALTTHTNRQHSSKTQCGVCKKCFSCVTALKVHMRCHSSERDYLCEVCQKSYRHKKSLKYHMRSHLNGDQFIKFTCPECSSGFPSRNDFNKHVKEWHPSTYFDFVIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -