Basic Information

Insect: Hypomecis atomaria
Gene Symbol: -
Assembly: GCA_964007245.1
Location: OZ023306.1:4519952-4541656[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.041 3.7 9.4 0.3 1 23 387 409 387 409 0.98

2 9 0.21 19 7.1 1.4 3 23 418 438 416 438 0.98

3 9 0.00031 0.029 16.0 0.3 2 23 473 495 473 495 0.96

4 9 0.00038 0.035 15.7 0.3 2 23 508 530 507 530 0.96

5 9 0.96 88 5.0 0.7 3 23 560 581 558 581 0.85

6 9 1.5e-05 0.0014 20.2 3.1 3 23 598 619 596 619 0.92

7 9 0.00048 0.044 15.4 0.6 1 23 624 646 624 646 0.98

8 9 1.8e-07 1.6e-05 26.2 4.1 1 23 651 673 651 673 0.98

9 9 0.01 0.95 11.2 0.2 1 23 679 702 679 703 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.041	3.7	9.4	0.3	1	23	387	409	387	409	0.98
2	9	0.21	19	7.1	1.4	3	23	418	438	416	438	0.98
3	9	0.00031	0.029	16.0	0.3	2	23	473	495	473	495	0.96
4	9	0.00038	0.035	15.7	0.3	2	23	508	530	507	530	0.96
5	9	0.96	88	5.0	0.7	3	23	560	581	558	581	0.85
6	9	1.5e-05	0.0014	20.2	3.1	3	23	598	619	596	619	0.92
7	9	0.00048	0.044	15.4	0.6	1	23	624	646	624	646	0.98
8	9	1.8e-07	1.6e-05	26.2	4.1	1	23	651	673	651	673	0.98
9	9	0.01	0.95	11.2	0.2	1	23	679	702	679	703	0.90

Sequence Information

Coding Sequence: ATGCCTCTTATGAGTAAAATATTGAAGAAAAAAGACGGCAATGCAAcgccaaatattaaaattaaactgtCCGATGTTAAATCACTAGTTACGCCAAAAGAAGATAAATCTAAACTGACTGATACTCATCACAGCTTAAAATCAGACGAAACCATAAAAACAGAGATATTAGATGATGATATGGAATGGcttgaagatgatgatgaatttaaaCTAGAACTAAACGAAGAAAGCGATGTCCTTGATGATGTGAGCTTGACTAGTGATGACGATTGTGAAATATTAGATGGAATCACAGACTCTGATGCTACAAGCCTGAGTAGTGTGCACTGGGAAGATTACTTATCAGAACCACCGGAGATACAAAACATTCCATCACCTTTAGATGATACCGATCTTAATGACGAAGATGTAACTGACATAGATACAGATGTTAGTAAAGAAAATTTCGACGATTACGTGACCATAAATCCAAATATGGAATGTGCGTATGCTTCTTTTGAAAAGATCGCTTCGCTACAAAAAGAAGTTGAAACAAAGTTAGTAAAGATCACTGAAGATCTTGATTCGGTATGCGAAAACTGGGAGATTTCTGCtcttaaaaatactaaatatcaGTACGTGTCGAAGGatgaaattttagatttttatcgTAAATTTTTGACTGATAGAGAAGTAGCGAATGAGTTGTGTCCGGAACGGTTGGAAGAATTCAAGAAAATGTCTGTGGAATCCAAATTGGCGTTGATTAATTCAGATTTGGAAGACATAAATGAAGTCTGCGTGAATATTGTGGAAGATCATAGTATGAAGCTGGTATTAGTTAAACAGAGAGTGAAAGAAGATTTGTTACGGAGAGTGGAAAAGTATGGCGAGTTGAAAGCAAAAGATGGCACCGTGTTCGATGTCGACAACATCGTCAAATTGCTCGACCTCTCGCAGACGATACGGCTGCGGCGCATCATGAAGAATTTACGTGATACTCGAAATAAGAAACGGCTCAACGCAGCGCTAACTTACGACTTGAAGATGATCTTAACAAAGGAGAAAGTCGACAAAAACAAGTCGGTATTCGACATACAGCACTTGAGGTCTGAGGAGGAAGCCATTGAGGAGTTCCAGCAGCGCAGACATTACGAGTGCTATGTCAATGCCAACTTTAAATGTGAAATATGTTACTTGCCGTTCCAATATGTCGGGCTGTTGGACTATCATATGAAGCTTCATAGTGATCAACCCGGTCAGTTTTGGTGCAGTCTGTGCAAGTTGAACTTAATTTCGCTGAAAAGTCTGAGGCAACACAAGCGTTCGCACAAATTCGTCTACAAATGTAAACTGTGCCCCTTAGTCACCTACTATGAGAGTAAAACAGTGCTGGGGTGCCACCAGAGCCGCGCGCATCCGAGCGACGGCCGCGTCTGCACCATCTGTGGGGGCGTGTTCTACTCCGCCTCCGGACTCAAATGGCACATACACCGGAAACACCCTGAGGGCCCCCCGGCGCCGTCGGGCGAGGAGGTGTCGTGCGAGTTGTGTAACAACACTTTTTCTTCGGCGGAAGCGTTCAAAAAACATCAGGCGACCCTACACCGACTCAAAACTGGTCAGCGCGGCCGGGGCAGGCCTCGAGGCGCGTCGCGGGGGACTAACCGGACAACGAGGAAACCTTCGATGACTTGTATACTGtgcaACAAAGTGTGTGTGAACTACCAGGCGCTAGTGCGGCATTTCTCGCTCGAGCATCCCGGACACGACATACAAACCGCGTACGCCGCTACATATGTGCATCTCTGCCATATTTGTGGCAAGGGGTTCAAGTCTCTGAAGAACTTGCAGACGCACATGAGCGCGAACCACGCGGCGGGCGGGTACAAGTGCCCCGAGTGCGGGAAACAATGCCCTTCCGGCGCCGCGCTCTACAATCACCAGTTCATGCACGGCCCGCGGACATTTTGCTGCGAGCAATGCGGCAAGAAGTTCCGGACGCCGTCTAATTTGTACAATCATATGCGGAGTCACACCAAAGACCATCGCTTCGAGTGCAACATTTGTGGCAAAAGGTTCCTATTCCGTGCCGCTATCGCAGAGCACATACGAGGGGTGCACCACAAGCTGCCTCGCGTCAGGAAAGGGGCCGGAGGTCGGACCAAGAGGTCGCGGAGTATCGAACCCGACGCGGACTATTCCGACAGATGCAACCCTAATAACAAGGACGTTGGAAGTATACCGGAGACGAAAGAAGATGAAACGGCGGCGGAAGGAGAAACGTACACGAATTTGGAAGTGCTTGAGGAGTTGGGAGACGGGATGGAGCTGGAATTGGGAGCTGAAATAAATGTATAG
Protein Sequence: MPLMSKILKKKDGNATPNIKIKLSDVKSLVTPKEDKSKLTDTHHSLKSDETIKTEILDDDMEWLEDDDEFKLELNEESDVLDDVSLTSDDDCEILDGITDSDATSLSSVHWEDYLSEPPEIQNIPSPLDDTDLNDEDVTDIDTDVSKENFDDYVTINPNMECAYASFEKIASLQKEVETKLVKITEDLDSVCENWEISALKNTKYQYVSKDEILDFYRKFLTDREVANELCPERLEEFKKMSVESKLALINSDLEDINEVCVNIVEDHSMKLVLVKQRVKEDLLRRVEKYGELKAKDGTVFDVDNIVKLLDLSQTIRLRRIMKNLRDTRNKKRLNAALTYDLKMILTKEKVDKNKSVFDIQHLRSEEEAIEEFQQRRHYECYVNANFKCEICYLPFQYVGLLDYHMKLHSDQPGQFWCSLCKLNLISLKSLRQHKRSHKFVYKCKLCPLVTYYESKTVLGCHQSRAHPSDGRVCTICGGVFYSASGLKWHIHRKHPEGPPAPSGEEVSCELCNNTFSSAEAFKKHQATLHRLKTGQRGRGRPRGASRGTNRTTRKPSMTCILCNKVCVNYQALVRHFSLEHPGHDIQTAYAATYVHLCHICGKGFKSLKNLQTHMSANHAAGGYKCPECGKQCPSGAALYNHQFMHGPRTFCCEQCGKKFRTPSNLYNHMRSHTKDHRFECNICGKRFLFRAAIAEHIRGVHHKLPRVRKGAGGRTKRSRSIEPDADYSDRCNPNNKDVGSIPETKEDETAAEGETYTNLEVLEELGDGMELELGAEINV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00827368;
90% Identity: iTF_00827368;
80% Identity: -