Hato037302.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023310.1:4986702-4989394[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.036 3.2 9.5 4.8 3 23 47 68 44 69 0.88 2 12 1.9 1.7e+02 4.1 0.1 2 23 96 118 95 118 0.95 3 12 0.016 1.4 10.7 2.3 3 22 188 208 184 211 0.87 4 12 0.0025 0.23 13.2 0.1 2 23 237 259 236 259 0.96 5 12 0.076 6.9 8.5 0.7 5 23 285 303 282 303 0.93 6 12 1.7e-06 0.00015 23.2 1.3 2 23 308 330 308 330 0.94 7 12 0.12 11 7.9 0.1 3 20 337 354 337 356 0.95 8 12 0.006 0.55 12.0 0.2 1 23 363 386 363 386 0.95 9 12 0.00087 0.079 14.6 0.2 1 23 392 415 392 415 0.90 10 12 0.0033 0.3 12.8 4.3 1 23 419 441 419 441 0.94 11 12 7.3e-06 0.00066 21.2 1.3 1 20 447 466 447 469 0.94 12 12 1.5e-05 0.0014 20.2 1.8 1 23 475 498 475 498 0.97
Sequence Information
- Coding Sequence
- ATGTGGTCTCACAAGTTGTACAACAACTTTTCTTTTGTTCTAGAGCTATCTCCTAAAGTCATGGCGCGGCAAAACGCAGTGTTGTTAATGCAGCACACAACGGCTTATCCGTTCCGACTGCCAGGGGACCACATGTGTTGCTTCATCTGTCGCAAAGAGTATAAAACCCCAGAGGAGTTTAGAGAGCACATGGTCCAGGACCATCATAGGTCTTATCATATGATTATGAAGAGCTCGCGTCTTCTTCATCAATCAGCCACATTCAAACTCGATATAACAGAAATGCAATGTCGTATTTGTTCCTCTCCGTTCGATAGTATTGAAAAGGTCGCCGAACATCTATCAACAGCGCATCGCGTCCCCGGTCTCAACTTGTCCTATGATCTAGGCGTAAATCCCTTTAAAATACACAATGGTGTCTATAACTGCATAGTATGCTCTGCAAAGTCTGTCTCGCTACGCGCTCTAAAGCTATCTTCTAATGTCATCGCGCGGAATAACGCCGCAATCTTAGTGCAGAATACGACGGCTTATGCTTTCCGTCTGCCGTGCGATGACATTTGTTGTATCATCTGCGACAAGGAGTTTAAAATCCCGGAAGAGTTTAGGCACCACATGATGCAGGACGACCATAAGTCTCCTAACAAGATATTGCGCTTTTTACGCCCTTCACGACCTATAACTCTCAAAGTTGATGTTACTGATTTACGATGCCGCGTTTGCGGCAACACTTTCGATAGATTAGAAAATATCGCCGCGCATTTATCAACCGAACATAGCTTAAACATAGACACTTCTCACGATTTAGGTGTGCAGCCCTTTATAATAAACAAAGGTATCAATTCTTGTATATTTTGCTCGGAAAAGTTTGTTACACTACGCGCTCTGAGCAGACACACTCAGGTACATTATTTGAATAACACGTGCGAGACCTGCGGAAAGTCATTCTCAACTTCAAGCTCCCTCAAAGTGCATGTAAAGTTCTCTCACCTTGGCTCCAAAACTTGGTGCCAAAAATGTAAGACGGTATTCGATAGTCCAGAAGAAAAACAAAACCATTTAATCGAATCAAAGAAGTGTTGGCagtattcgtgcaatatctgcGGGGAAAAATTGATCTCGCAAAGTCTCAAAGCGAAGCATGCTCAAATTAAACACAATATTTCGCGCCACTACCCATGTCCAGAATGTCCAGAAGTTTTCACGAATAGAACCAAGCGACGTAATCATTTTCTTGCCGCTCATACGAATAAATTTAAATGTTCCTGTTGTGATAAGACGTTTTCAACCAATTACTATCTGGTCAATCACTCCGTCATGCATTCTTCTGAAAAAAAGTTTCAATGCAATGTGTGTTTGAAAGAGTTTAGCAGAAAGAAGAATTTGAAGCAACATATGCCGATTCACATGAAGAATAAACCTTACAAGTGCGAAATTTGCAATAAGCAGTTCAATCAACGTGTCAGTTGGAAAACTCATATGTCGTCCTACCACTCTGAGCTGAAAACTTCGTAA
- Protein Sequence
- MWSHKLYNNFSFVLELSPKVMARQNAVLLMQHTTAYPFRLPGDHMCCFICRKEYKTPEEFREHMVQDHHRSYHMIMKSSRLLHQSATFKLDITEMQCRICSSPFDSIEKVAEHLSTAHRVPGLNLSYDLGVNPFKIHNGVYNCIVCSAKSVSLRALKLSSNVIARNNAAILVQNTTAYAFRLPCDDICCIICDKEFKIPEEFRHHMMQDDHKSPNKILRFLRPSRPITLKVDVTDLRCRVCGNTFDRLENIAAHLSTEHSLNIDTSHDLGVQPFIINKGINSCIFCSEKFVTLRALSRHTQVHYLNNTCETCGKSFSTSSSLKVHVKFSHLGSKTWCQKCKTVFDSPEEKQNHLIESKKCWQYSCNICGEKLISQSLKAKHAQIKHNISRHYPCPECPEVFTNRTKRRNHFLAAHTNKFKCSCCDKTFSTNYYLVNHSVMHSSEKKFQCNVCLKEFSRKKNLKQHMPIHMKNKPYKCEICNKQFNQRVSWKTHMSSYHSELKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -