Hato035479.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023308.1:969535-971139[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.042 3.8 9.3 0.2 2 23 185 207 184 207 0.88 2 10 5.6 5.1e+02 2.6 4.1 1 23 213 235 213 236 0.90 3 10 0.27 24 6.8 5.9 1 23 241 263 241 263 0.97 4 10 1.4e-05 0.0013 20.2 0.0 1 21 268 288 268 289 0.95 5 10 6.2e-06 0.00056 21.4 0.3 2 23 309 330 308 330 0.96 6 10 3.2e-05 0.003 19.1 2.6 1 23 337 359 337 359 0.98 7 10 4.3e-05 0.004 18.7 0.5 1 23 365 387 365 387 0.96 8 10 1.2e-05 0.0011 20.5 1.8 1 23 393 415 393 415 0.96 9 10 0.00064 0.058 15.0 4.1 1 23 421 443 421 443 0.97 10 10 9.7e-06 0.00089 20.8 3.8 1 23 449 472 449 472 0.98
Sequence Information
- Coding Sequence
- ATGGAATTAGAAGATTTTTACTGCCGATTGTGCGCCGAATCCAAACCAGCGAACAAACATTTAAACTTGGACCTggataatgtgaaaaaaatcgaaattatCGAGAAGTTGGCTCGCGTTAACGCTgccacggattttgatgatGAAAATCTGCCCAAAACTGTTTGTTTGGAATGTATGCATGCATTAAATAAAGCTTTCGACTTCGTTGTAGCAATAGAATATGCCCAATATACCCTTAGTCACTTATTTGATGCCTCGATAGTGAAAAAAGAAGAGGTCGAAACGATCACATTCATGACTGATCATGACTTAAGCCATCATGATTCAacagaatgtgatacaaaaatcaATGATATGAAATACGATTTGAAAACGGAATCTTGTGACGAAGCTAACGGTGAAGAATTATATGAAAACTATGATGAAGCAGACAGTGATCATGAAATATGTCCAAGAAAAATATCAAGAGCAAAAAATAATCTAGATGTTGATTCCATCCCCTTAGCCCAGCTTTCACAGTTAAAACTTTCCTGGAAAAACTACACCTGGTACTGCACTTTCTGCGAAACACTATTTTCAtcaattgatgaattaaaaaagcACTCAATAGAAGTCCATAAAATGTGTAACCCATACCGCTGCACAGattgtaaaataagaaaatataggCTAAACAAATTCTTAATTCATGTCCAAAGACATCATaagcaattaaaattttcatgtCACATATGCTTCAAAGAGTTTAAAACTGTATTGGCAGCTTGTAAACATAAAAAATCTCATATTACAACAAAATTTATATGTCCTGGATGCAATACTTCGTTTCCAAGTAACGATGAGCTAAATCAACATATGGAGCAGTTTTGCCAGTTGAAAAGAGTGAGACGTCTTCCAGAGGTGTTCCAAACTGAAGGACTGACATGCACAGTATGCCAAAAGACGTTTAAAAATAAAGGTGGACTCAATGCTCACGTGTTAATCCACATGGACAGAAAGAAAGATCATACATGTGAAGTCTGTGGGAAAGGATTCTTTTTAAAACACAACCTATCAGCTCATATGCTATCCCACAACGATGGAAGACCGTACAAATGTCAGCTATGCAACGCCACTTTTAAAACTCcgagattattaaaaaatcatgTCGGCATACATACAAATGATAAGCCATTTACATGTAGTGAATGTGGACGTAGTTTCCGCTTGCAACGGCATCTAAAAGCTCACAGTATAATACATACAGATATACATCCTTACGCCTGTCCTCATTGTGACAAACGGTTCCGATTTAAACCATTACTAAACTGTCACATACGCTTACACACTGGTGTTAAGCCTTATTCTTGTGAACAGTGCCATCGAGACTTCTCTAACTGGCCGAATTATAACAAACACATGAAACGGAAACACAACATGGATTTATCTAAAAAGAAACATACGCCAGATGGAGTATTCCCAAGAGATCCGAATACTGGTGAGGTTATAAAAGAACCAGAGACTAATAAAATGATGGAGTGGAAAAAAATGATGTTGTTGAAACGAATGGGAAGACCGAGTACAAAAAATATGGAGTTGGATGCAACTTTGTTACAGCTTTAA
- Protein Sequence
- MELEDFYCRLCAESKPANKHLNLDLDNVKKIEIIEKLARVNAATDFDDENLPKTVCLECMHALNKAFDFVVAIEYAQYTLSHLFDASIVKKEEVETITFMTDHDLSHHDSTECDTKINDMKYDLKTESCDEANGEELYENYDEADSDHEICPRKISRAKNNLDVDSIPLAQLSQLKLSWKNYTWYCTFCETLFSSIDELKKHSIEVHKMCNPYRCTDCKIRKYRLNKFLIHVQRHHKQLKFSCHICFKEFKTVLAACKHKKSHITTKFICPGCNTSFPSNDELNQHMEQFCQLKRVRRLPEVFQTEGLTCTVCQKTFKNKGGLNAHVLIHMDRKKDHTCEVCGKGFFLKHNLSAHMLSHNDGRPYKCQLCNATFKTPRLLKNHVGIHTNDKPFTCSECGRSFRLQRHLKAHSIIHTDIHPYACPHCDKRFRFKPLLNCHIRLHTGVKPYSCEQCHRDFSNWPNYNKHMKRKHNMDLSKKKHTPDGVFPRDPNTGEVIKEPETNKMMEWKKMMLLKRMGRPSTKNMELDATLLQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00143291;
- 90% Identity
- iTF_00827287;
- 80% Identity
- -