Hato037290.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023310.1:4959460-4962928[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.036 3.3 9.5 0.6 1 20 75 94 75 96 0.94 2 16 6.1 5.6e+02 2.5 0.2 3 23 125 145 124 145 0.94 3 16 0.011 1 11.2 0.4 2 23 168 189 167 189 0.97 4 16 0.0032 0.29 12.8 0.1 1 23 193 215 193 215 0.96 5 16 0.12 11 7.8 0.1 1 10 220 229 220 243 0.89 6 16 0.0066 0.6 11.8 3.8 1 23 249 272 249 272 0.96 7 16 0.00014 0.012 17.2 1.0 1 23 279 302 279 302 0.97 8 16 5.7e-06 0.00052 21.5 4.7 1 23 309 331 309 331 0.98 9 16 0.099 9.1 8.1 0.5 1 13 338 350 338 351 0.90 10 16 7.3 6.6e+02 2.3 0.3 1 23 404 426 404 426 0.89 11 16 0.016 1.5 10.6 0.1 2 23 451 473 450 473 0.93 12 16 0.016 1.4 10.7 2.7 2 23 496 517 495 517 0.97 13 16 6.8e-05 0.0062 18.1 0.3 1 23 521 543 521 543 0.98 14 16 0.0085 0.78 11.5 0.4 1 23 548 571 548 571 0.95 15 16 0.023 2.1 10.2 2.9 1 23 577 600 577 600 0.97 16 16 0.014 1.2 10.9 1.3 1 23 606 629 606 629 0.95
Sequence Information
- Coding Sequence
- atgcattttttatttataggaaAAAGAAAACACGGACACACCAGCGATGAAAATGAAACTGTTATAAACTTACCTGAATTTCATGAAATTAGTCCGAAAATTCAAAAAGGCAAGTTGTACCAGAGGAGCGCAAGAGCTGAAGCGAGAATAGCGATGAAGAAGAATGCCTCCTCGATCTTACAATGCTGGTCATTTTGCCCGTTCCGATGGATCAAAAACAGATTCAAATGCGCGTACTGCGAATCAGACTTCACCGAATGTGATGCGTTGAGAAAACATGTCAGTATCTGCTCCAGACAGCATACAATAAGTGACATCTATAATAAGTTTCGAGAGATGCCTCTAATCAATGTGGATGCTACGGATGCCATTTGCCGTGTCTGTGCCGTGCCCTTCGAAAACATCTCTCAAATGCACGATCACGTAACCCAACACGGCTTCGATTACGATATTCACCACCGTGATGGTATATTGCCTTTCTATTTGAACAAGGAAATGTGGAAATGCTTCATATGTTCCGAAATATTCAATAACTTCTTGAAATTGTACGAGCATATGAATGTTCATTACCAGTATTATATATGCGATGTATGTGGAAAGGGATATATGACAGCTCCACGGCTGAGGAAGCATTCGGAGGTGCACATATCTGGCTCCTTTTCCTGTTCTGAATGTGGCAAGGTTTTTCTCATGCGCGCCGCAAGAGATGCTCATAAAGCGTCTGCTCACAAAAAAGGTCCTCGATACGAATGCCCTCACTGCGATACTCGGTTTCACAGCTACTACGATAGAATGGCACATTTAAAAGAAACTCACAGCGTAAAAGAAGTGGTCTACAAATGTTCCTATTGCGATTTATCGTTTAAAACGAGCGGGACTCGTGCAACTCATGTTCGGAATATTCATTTTATGCCGCAGCGagatttcaaatgttcattatgCCATTGGAAATTTAAAACAAGCTATGAGCTCAAAAGACATATGGTGAGGCATACGCCTAAAACGAACTCTTATATTTGTACCACGTGCAATAAAACGTTTCCCCGAGCGAgacGGGGGTGCACCAAAACAGAGCCTGTCAGCCTCTCCTCCACAGACGCTCCTAAAATCGTTTGGAAGCGAAGGCGAACGCTGGTAGAAGACAAAGCGAACGCAGCTTTGCTCATAGAATGCTCCAATGCTATAGTTTTCAGATGGCAAAGAGGGAAATTCATGTGCGCCTACTGTTCGAACATATACGCCAACATACATGAGATTCGATCCCATTCCGTTGTACACAACAGGcttgatatatttaaaaatccCCAAATCAGACAGTTGTTTCCGCTAAAAGTAGAAATTACCAACCTATCTTGTACTGTTTGTGATTTGCCCACGAGTACTATTGACCTCCTGAAAAATCACTTGTCTCAAGTCCATTGTAAAACAATTGATCCAAACTATACTGATGGCATTATACCTTTCTATTTGACGGGCAAAGAATTGAAGTGCGTTCACTGCGATTTGCAATTCGATAAGTTTATGACGCTCTTTATTCACATGAATAAACATTATCAGAGCTTCGTATGTGATACTTGCGGCAAAGGGTACTCAGGGCAGAATAAACTACGGTCACATCAAGCTATGCATGAAATAGGAGAATTCAAATGCACTCAATGCGATACGGTTCTACCTAATCGAATACTTAGGAACAGACACATGAATGATGTTCACGGCCCAAAAGATCGATACCGCTGCCCCATCTGCAATGATCACTTCGATTCATATCATAATCGATTACGACATTTGAATGTGGTACACGGAGAGAAAACGGAGTACAAGTGCACCTACTGTCCAGCCGTGTTTATAAGTTGTACCTCTAGATACTCCCACATCAACGGCGTTCATATGCGAAAAcggaaaaagaagaaaaagaaagagtCTCAAAGTGCATAA
- Protein Sequence
- MHFLFIGKRKHGHTSDENETVINLPEFHEISPKIQKGKLYQRSARAEARIAMKKNASSILQCWSFCPFRWIKNRFKCAYCESDFTECDALRKHVSICSRQHTISDIYNKFREMPLINVDATDAICRVCAVPFENISQMHDHVTQHGFDYDIHHRDGILPFYLNKEMWKCFICSEIFNNFLKLYEHMNVHYQYYICDVCGKGYMTAPRLRKHSEVHISGSFSCSECGKVFLMRAARDAHKASAHKKGPRYECPHCDTRFHSYYDRMAHLKETHSVKEVVYKCSYCDLSFKTSGTRATHVRNIHFMPQRDFKCSLCHWKFKTSYELKRHMVRHTPKTNSYICTTCNKTFPRARRGCTKTEPVSLSSTDAPKIVWKRRRTLVEDKANAALLIECSNAIVFRWQRGKFMCAYCSNIYANIHEIRSHSVVHNRLDIFKNPQIRQLFPLKVEITNLSCTVCDLPTSTIDLLKNHLSQVHCKTIDPNYTDGIIPFYLTGKELKCVHCDLQFDKFMTLFIHMNKHYQSFVCDTCGKGYSGQNKLRSHQAMHEIGEFKCTQCDTVLPNRILRNRHMNDVHGPKDRYRCPICNDHFDSYHNRLRHLNVVHGEKTEYKCTYCPAVFISCTSRYSHINGVHMRKRKKKKKKESQSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -