Hato033387.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypomecis atomaria
Gene Symbol
Zfa
Assembly
GCA_964007245.1
Location
OZ023305.1:12544916-12578882[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00031 0.028 16.0 1.0 1 23 266 288 266 288 0.99
2 10 0.00088 0.081 14.6 0.5 1 23 321 344 321 344 0.95
3 10 5.5e-06 0.00051 21.5 2.0 1 23 351 374 351 374 0.96
4 10 0.032 2.9 9.7 0.4 2 23 381 403 380 403 0.94
5 10 0.00021 0.019 16.6 1.6 1 23 416 438 416 438 0.97
6 10 7.9e-05 0.0072 17.9 0.2 1 22 444 465 444 469 0.94
7 10 0.00048 0.043 15.4 1.6 2 23 478 500 477 500 0.95
8 10 6e-05 0.0055 18.3 1.8 1 23 506 529 506 529 0.97
9 10 1.9e-05 0.0017 19.8 0.6 1 23 538 560 538 560 0.99
10 10 0.0043 0.39 12.4 0.1 1 23 566 589 566 589 0.94

Sequence Information

Coding Sequence
atGGAAGGTACCAGTTCTAAAAGAGTGGATGAACTTTGTTTGGGGTGTCTTTGTCGCCCAAATGAGAACAAAATACAGGATTATAAGATACAATATGCCCATTTCTGGGCTATATTTGAGGTAAACACAATAAAGTTGTGCTATTTATGTAAGAGAATGGCTCAACATGCCGAAACATTCATACAGAATGTGCAAAGCAATCAGATCTTGCTTCAAAACTGCCTCGGGgatttAGTCACCACAATAGATGAAGCTCGCTCACAGCTCCAACCCTCTGTAGTCCTCTCTCATTCTCCACTAGACCCTATAAATCTCACCGAAAAAGACTACACAGACTTTAAAACCTCTGGCAAAGAGTGCAAAATCCTTGAGCACAGTACCTGCAATAAGTTTCAAAATAGCATGAATAAAGAAAATGATATTTATGAAGATGATTtgaaaaatgatgatgatgaaagtaTTGAAATGAATAAGAGAAATATAAAAGTTGAATTGAAAGTTGAGGAAGCTTTGGATTTAGTTGGAGGgtttgatgatgataataatgatgATCTGCAAGACCCatacataaaagaagaagatgaTTTCCCGCtacatttattgaaaaaagaaatacaaataGAAGCCATTCAACTCAAAACCTTAAGACCCAAGAAAAAAGGAAGGATTGAAAGAGAAaggaaaaaagtaaaaagcaGGGTGTTAAATAGAAAAACTAAGGAATTGCAACTTAATGAAGAATGCATGGAAGAGAGAAAGCAACAGTCACAGGATGTGGTTTATTTAAACTGCGCTTACAAATGCGAGGATTGTCTGAAAGGATTCAATTATAAGGCAGCTTTTGATAATCATTTGAAGAGGCATAGTGAGgaaatgGGCGCATTCAAATGTGAAATTTGTAAACTAAGAATGGATTCTCACGACAAGTTGTTGAGTCACAAGAAATGTCACACTGTCCGTTTCCAATGCACAGAGTGCGGCATAGTGCGCACGAGTCGGTCGACGTTGTTAGACCACCACAACGCGATACACAAACAGGGGGAGAGTCAATTCGCCTGCCCCTACTGTCCCAAGACTTTCAAACGCCAAATGTCTCAAAGAAAGCATATCAGATATACTCATCAGAAAAAAGAACGAGTCACCTGTGTATTTTGTCAGAAGACCTATGCAAATAAAGAAGTCATCAAATCTCATATGATGGCAAAACATCCAAAAGAAGTGGCAGCCATAGAGCCAGCGAAAAAGTATCCCTGCGAAGAATGTGGCATGCTATTCCGGTCGCCCACACACCTCCGCATGCACAAATACAAACACTCACTCAGGCGGGACTACTACTGTGTGGAGTGTGACAAGGCGTTCAAATCAGAAGCAGTTTTGAAACAACATTTAAGGACGGCACAACCACATATCAATTATTCAGACCTGCCgttATGTTGTGAACAATGTGACAAAAGATTTGCAATAAGAAGAGATTTGGACAGACATATGAACAGTATTCATCTGGAGGTCAAACCTTTCAAATGTGATAAATGTGACAAGgcTTATGTAAGCAGTTGGTCTCTGACAGACCACAAGAGGCACGTGCACGAGGGATATAAACGTCCCCTGCGGTACCCCTGCAAGTTCTGCGAGAAGATATTCGATcgAAGTTCAATCCTCAAAGCCCACATCCGTACGCACACCGGCGAGCGTCCCTACCAATGCGACAAGTGTCCCGCACAATTCAGCCAATCAGGAGTTCTGGCCACGCACAACAAACTCATTCACCAACGCCTTACGAGAGACGGGAAACCCAAGCAAAATGCCGGACTCAAGGATATTtag
Protein Sequence
MEGTSSKRVDELCLGCLCRPNENKIQDYKIQYAHFWAIFEVNTIKLCYLCKRMAQHAETFIQNVQSNQILLQNCLGDLVTTIDEARSQLQPSVVLSHSPLDPINLTEKDYTDFKTSGKECKILEHSTCNKFQNSMNKENDIYEDDLKNDDDESIEMNKRNIKVELKVEEALDLVGGFDDDNNDDLQDPYIKEEDDFPLHLLKKEIQIEAIQLKTLRPKKKGRIERERKKVKSRVLNRKTKELQLNEECMEERKQQSQDVVYLNCAYKCEDCLKGFNYKAAFDNHLKRHSEEMGAFKCEICKLRMDSHDKLLSHKKCHTVRFQCTECGIVRTSRSTLLDHHNAIHKQGESQFACPYCPKTFKRQMSQRKHIRYTHQKKERVTCVFCQKTYANKEVIKSHMMAKHPKEVAAIEPAKKYPCEECGMLFRSPTHLRMHKYKHSLRRDYYCVECDKAFKSEAVLKQHLRTAQPHINYSDLPLCCEQCDKRFAIRRDLDRHMNSIHLEVKPFKCDKCDKAYVSSWSLTDHKRHVHEGYKRPLRYPCKFCEKIFDRSSILKAHIRTHTGERPYQCDKCPAQFSQSGVLATHNKLIHQRLTRDGKPKQNAGLKDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00034036;
90% Identity
-
80% Identity
-