Hato001788.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023279.1:24264725-24279155[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0086 0.78 11.5 1.1 1 23 230 252 230 252 0.99 2 15 0.13 12 7.8 3.7 1 23 259 281 259 281 0.98 3 15 0.00051 0.046 15.3 1.0 1 23 285 308 285 308 0.97 4 15 0.041 3.8 9.3 1.1 1 12 315 326 315 326 0.92 5 15 0.00051 0.046 15.3 1.0 1 23 327 350 327 350 0.97 6 15 0.041 3.8 9.3 1.1 1 12 357 368 357 368 0.92 7 15 0.00051 0.046 15.3 1.0 1 23 369 392 369 392 0.97 8 15 0.041 3.8 9.3 1.1 1 12 399 410 399 410 0.92 9 15 0.00051 0.046 15.3 1.0 1 23 411 434 411 434 0.97 10 15 0.041 3.8 9.3 1.1 1 12 441 452 441 452 0.92 11 15 0.00051 0.046 15.3 1.0 1 23 453 476 453 476 0.97 12 15 0.041 3.8 9.3 1.1 1 12 483 494 483 494 0.92 13 15 0.00051 0.046 15.3 1.0 1 23 495 518 495 518 0.97 14 15 1e-05 0.00093 20.7 1.5 1 23 525 548 525 548 0.96 15 15 0.00072 0.066 14.9 0.3 2 21 555 574 554 575 0.93
Sequence Information
- Coding Sequence
- ATGGCGCAAAATGCTGAACTGTTCATACAAAATGTGCAAAGGAATCAGGTTTTGCTCCAAAACTGCATTGGGGATTTAGTGACCATAATAAAAGAAGCTCGCTCTCAGTTCCATCCATTAATTACACTCTCTCAATCGCCAGTAAATTCTATAGATCTCACCGAAAAAAACAATATAGACCTTATAATTTTAGACAATGAGTTCAAAATACACGAACACAGTACCTGCAATAAGTTCCAAAATAGCACATACGAAGTGATGATTACAAGTGATATCAAAAATGATGAAGAAAATGTTGAAATGGAGAAGAGGAATATAAAAGTAGAATTGAAAGTTGAAGAGGATGCAAATTTGGATTTGGAGGATAGAGgattagatgatgatgatgAATATCCAGACCAACAAGACTCAtccataaaagaagaagaggtAGACAACGATTTTCCCCTTAATTTACTGATTAGAGAAGTAAAAACGGAAGCCATTCAGAAGACTGTAACACCGCCCGTAAAACAAGATGTTGTTGAAATAGATGGGAATAACGTAAATGACACGATTTTAGATAGAAAAACTCAGAGAAGGAAACTTAATGAGTCATTAGGAATAAAGAAGATATTAATAACCAAAGAAGAATTAATAGAAGAGAGAAAGCAACAAGCATTGGATAAATCATATTTGGATTGCGCCTACAGGTGTGAAGATTGTATCAAAGGGTTCAACTTTAAAGTTGGCTATGACAATCATATGAAGAAACACAGTGAAGAATCGGGTAGATACAAATGTGACATCTGTAAACTCAGAGTGAATACACACGACAAGTTTTCGATCCATAAACAATATCACACTGTCCGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGAAGCCAAACGTCCCAAAGGAAGCACGTGAGAAACTCGCACCAGAAGAGAGAGCGCGTCACCTGCGAGTTCTGTAACAAGACCTATGCTAGTAAAGAAGCTCTCAAGTCGCATAAGATGATGTAA
- Protein Sequence
- MAQNAELFIQNVQRNQVLLQNCIGDLVTIIKEARSQFHPLITLSQSPVNSIDLTEKNNIDLIILDNEFKIHEHSTCNKFQNSTYEVMITSDIKNDEENVEMEKRNIKVELKVEEDANLDLEDRGLDDDDEYPDQQDSSIKEEEVDNDFPLNLLIREVKTEAIQKTVTPPVKQDVVEIDGNNVNDTILDRKTQRRKLNESLGIKKILITKEELIEERKQQALDKSYLDCAYRCEDCIKGFNFKVGYDNHMKKHSEESGRYKCDICKLRVNTHDKFSIHKQYHTVRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRSQTSQRKHVRNSHQKRERVTCEFCNKTYASKEALKSHKMM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -