Hato027649.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023300.1:884558-887590[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.3 1.2e+02 4.6 0.4 2 23 37 57 37 57 0.88 2 13 0.0001 0.0092 17.6 0.1 1 23 65 88 65 88 0.92 3 13 0.00036 0.032 15.8 3.0 1 23 94 116 94 116 0.96 4 13 0.02 1.9 10.3 0.4 1 23 122 144 122 144 0.95 5 13 0.00019 0.018 16.7 0.1 1 23 149 171 149 171 0.94 6 13 2.6e-06 0.00023 22.6 1.9 1 23 177 199 177 199 0.98 7 13 0.55 50 5.8 0.2 2 23 215 236 214 236 0.83 8 13 0.16 15 7.5 1.7 3 23 447 468 446 468 0.94 9 13 1.2e-05 0.0011 20.5 0.9 2 23 475 496 474 496 0.97 10 13 0.51 47 5.9 0.4 1 23 502 524 502 524 0.95 11 13 0.0071 0.65 11.7 1.3 1 23 530 552 530 552 0.96 12 13 1.2e-05 0.0011 20.4 1.2 1 23 558 580 558 580 0.97 13 13 1.1e-05 0.00097 20.6 1.6 1 23 585 608 585 608 0.95
Sequence Information
- Coding Sequence
- ATGTCAATCGATATAGACGGGGAAAGCAAGCCCGAGCCGGACGCCCCACACCCACGCGAGGAAGACATTCCCCACACGATCATAACATCGGACGGGAGTAAACGCGCCCGTTGCGGGCTGTGCGGGCGGAGCGTGGCGCACGCGGCGTGGCGGCGGCACGCGCGGCGCCACGCCGGACCCGCGGCGCGCCGCTACAGCTGCCACGCGTGCGGCCGCGCCTTCACCGACGGCGCTAACTTAACCCGCCACGTCGCCGCCGTACACACCACCAATCGACCTCACATCTGTTCTCTTTGCTCTCTCACATTCACTCGAGCGGAGCATTTACAAGAACACCGTCTATCTCATTCTTCAACTCGTGAATTCTTATGCGACACGTGCGGGCACGCGAGCGTGTCTCGGGCCGCGTTACGCATGCATCGTGTCACCCACCGGCCCGCGACGCACGCTTGTCTGGAATGCGGCGCGCGGTTCAAACGCGCCGGAGAGTTGCGCGCGCACGCCTCGGTCCACTCGGGCGAGAAGCCTCATAAATGCGCCCTGTGTGGTAAAGCTTTTCGACTGCGCGCGCAACTTACTACCCATATGAAAACGCACAGGAGTGAACCGACATGCTCGTCGGTCGAGCCGCGCGCCTGCGTGCGATGCGAGCACTGCGCCCGGGACTTCCCCGACTCGAGCCTGCGGGCGCACTTACTGGCAGCACACGCACCACTTCTATTCCTTTGCGCCGAATGCCACCTCTACCACAACCGACGAGACATGATCCCACACATGGCCACACATATAGAAAAAAGAACAAAGACACAAGAAGAATCAATAGATAAAACAAAACCCGACATCAAAACTTCGATTCCCGTGGTTAGGATACAACGTCTCCCGTGCAAAATGGGCCCTCCGCCTTCAGTGGAAGATCCGCCACTTCTCAGACCGATTCCGTTAACTGACGATTCTCAGAACCCACCTTTACAAGCTGATACCTTGAGTCCGCTGGCGTTGCAAAAAATCGAGTCAAATGACCTGGACAAAGATACCAATCTGACTAGTATCGAAGCAGAACCTAACAACCAAAATACTGAGTCTGCAAATGACTTGAACAGCAACAGTCCAATAGAACAGCAAACTgatgtaaacaaacattcaaAAGAAACCGATAGAACTGACTCAGAACAAGTCAACGATTTCTCCGACCACAGCGACACTGAAAACGAATTCGGGACCCTACCGGAGTCCGTATTCGACGCTATCGAGGATTCACAAGACGCGCGATCAAATGACGACCAAAATGTACTAGAAACCGAAAAAAGCGAACCAAAAAAACCGAATATTCCGCGACCGTGTCCTATTTGTAGCAAACAGTGTAATTCTCTCTCCGGTTGGTATTATCATCTAAAACACGCTCACGGAACTAATAAAAACTTGACCTGTGATAggtgcaataaagtgttcacTACTAAAAATGAGTTAGCGATACATTCTCGAACGCATGCTAAGGAAAAGCCGTTTCAGTGTCGAACGTGTTCTAGCGTGTTTGCGTCTAAAGCGGGGAGGTACATTCACGAGCAAATACATCGTAATAAGCGAATGCACGTGTGTAGTCGGTGTCCGCGCGCTTTTCGTTGGCGAGCGCAGCTCAATCGTCACGAATCGAGGCACGATGCCACCAAAAACCACATTTGTTCTCATTGTGGACTAGGTTTCAGCGTCGCCTTCGATCTGTTACGTCATATGAGAGTACATAACCCCGGCTGCCATCGCTGCGATATCTGTGATGCGACCTTCAAGCAGAAACGGTACTTGAAAGTCCATATGGAGAATATTCATTTAACCTTGACCTCGTTGTTTAAGAaaactagtaaaaaatataagaaaccTCCAATAGGAGCAGATTGCGATCGACCAACCGATGGTTAG
- Protein Sequence
- MSIDIDGESKPEPDAPHPREEDIPHTIITSDGSKRARCGLCGRSVAHAAWRRHARRHAGPAARRYSCHACGRAFTDGANLTRHVAAVHTTNRPHICSLCSLTFTRAEHLQEHRLSHSSTREFLCDTCGHASVSRAALRMHRVTHRPATHACLECGARFKRAGELRAHASVHSGEKPHKCALCGKAFRLRAQLTTHMKTHRSEPTCSSVEPRACVRCEHCARDFPDSSLRAHLLAAHAPLLFLCAECHLYHNRRDMIPHMATHIEKRTKTQEESIDKTKPDIKTSIPVVRIQRLPCKMGPPPSVEDPPLLRPIPLTDDSQNPPLQADTLSPLALQKIESNDLDKDTNLTSIEAEPNNQNTESANDLNSNSPIEQQTDVNKHSKETDRTDSEQVNDFSDHSDTENEFGTLPESVFDAIEDSQDARSNDDQNVLETEKSEPKKPNIPRPCPICSKQCNSLSGWYYHLKHAHGTNKNLTCDRCNKVFTTKNELAIHSRTHAKEKPFQCRTCSSVFASKAGRYIHEQIHRNKRMHVCSRCPRAFRWRAQLNRHESRHDATKNHICSHCGLGFSVAFDLLRHMRVHNPGCHRCDICDATFKQKRYLKVHMENIHLTLTSLFKKTSKKYKKPPIGADCDRPTDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -