Hato037277.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023310.1:4898314-4902087[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.68 62 5.5 3.6 3 23 32 53 30 53 0.97 2 24 7.4 6.7e+02 2.3 0.0 2 23 80 102 79 102 0.93 3 24 0.35 32 6.4 0.9 1 14 123 136 123 137 0.91 4 24 0.076 6.9 8.5 1.1 2 20 234 252 233 256 0.84 5 24 0.5 46 5.9 2.3 1 23 277 299 277 299 0.96 6 24 0.005 0.45 12.2 2.8 2 20 304 322 303 325 0.93 7 24 0.013 1.2 10.9 4.9 1 23 332 355 332 355 0.97 8 24 0.00077 0.07 14.8 1.5 1 23 360 383 360 383 0.97 9 24 0.0017 0.15 13.7 0.7 1 23 389 412 389 412 0.96 10 24 3.2e-05 0.0029 19.1 2.0 2 23 419 440 418 440 0.96 11 24 3e-05 0.0027 19.2 1.3 1 23 446 468 446 468 0.98 12 24 0.52 47 5.9 0.1 1 14 474 487 474 488 0.91 13 24 0.61 55 5.7 0.3 3 23 527 547 525 547 0.97 14 24 3.6 3.3e+02 3.2 0.0 2 23 574 596 573 596 0.90 15 24 0.002 0.18 13.5 0.4 1 23 617 639 617 639 0.96 16 24 0.0023 0.21 13.3 0.2 1 23 643 666 643 666 0.96 17 24 0.65 59 5.6 0.1 1 23 707 730 707 730 0.94 18 24 0.37 34 6.3 0.1 2 23 754 776 753 776 0.91 19 24 0.0017 0.16 13.7 0.1 1 23 797 819 797 819 0.97 20 24 0.012 1.1 11.0 1.1 2 23 824 845 823 845 0.92 21 24 0.0002 0.018 16.6 1.4 1 23 852 875 852 875 0.98 22 24 0.25 23 6.9 4.2 1 23 880 903 880 903 0.97 23 24 0.0051 0.46 12.2 3.2 1 23 909 932 909 932 0.97 24 24 4.2e-05 0.0038 18.8 2.5 1 23 938 960 938 960 0.98
Sequence Information
- Coding Sequence
- ATGGGTGACTATCGTGACGGGCGCGACAATGCAACCGTTATACTAGGGTGTTCCAACGTCCTCCCCTTCAAATGGCGCCGAAACGTGTTCGGCTGTCCGAGTTGTCACTTCACTTCGCCGGATTTCACATGCCTCAAAAACCATATTATGACAAACCATTCgctaaaatcaaataaactcGATGTCCTTAAGAAATGTCGACGAGGCGATCCTATTAAAGTTGACGTTGCGGACCTGAAATGCGATCTGTGTGAGCAAGATATTGACGATATACCTGCACTAATGGACCATCTTAACAAAATTCACCAAAAACACATCGTGAAAAATTTCGATTCGGGCCTCGTTCCTTACTTGCTCGGGAACGGGTTTAAGTGCGCGTACTGCGGTGAAGATTTCGATCGGAAACACGGGAAATCTCAAATTACAAAACTGCCACCCAAAAACAATAAGTCCAAAGAAGGGTTGAGAAGGAAATTTAATCTATATGGCAGTATCAAGTCCAACGCGGGCATCGTCCTGGAATGTTCAAACGCATGTTTGTTTAAGTGGCATCGAAATGTTTTCGGATGTGCCAGCTGCGATTATACTTCGGCGGAATTCGGCCCCATCAGGGCTCATGTCGAAGCCAGAAATTGTCAAGGACATAATAAGCGCTACTTGCGATTCTCAGACATACTAAAGGTTGAAGTCACAGATTTGAAATGCAAGCTCTGCGATAAACCTTTCAACGATTTGAAAACGTTGCTTTGCCATCTAGGAGAGGTGCACGATGAACCAGTCGAGATAGAGCATGATCCTGGGCTCATTCCTTACTTGTTGAGTGGTGGCCATGTGTGCGCTCTCTGTGGAGTAGAATTCGATCGCTTCACAAAACTAAATTGCCACATGAATGAGCACTTCCCTAATTGCGTTTGCTCTTATTGTGGCCAAAGTTTTGTTAACGCGTTTAGATTGAAACACCACATCTGGCAACACAAAAATGGCAAAGTGAATTTCAAATGCTCCTCGTGCAAAGTGACTTTTGCAACAAGACACCAGAAACAAAAGCATATGATATCCAAACATGGCAAGCTTACCTACAAATGTCCGTACTGTAACGAGATGTTTAAATCTTACACGCTTAGAGTGCAACATTTGAATAAAGAGCAtggaaaaaagataaaatattctTGCAAGCTGTGCCCGGAAGTATTCAAAACTACTTATACTCGAGCGAAACATGTCCGGCTTGTCCACACGGAAAGCGAACCGCTGTATTGTCCTGTTTGTAACTACATGTGCAAAACCGCAACGCAATTGAAGAGACACATGATAAGACACGGCGGTGAGAGAAAACACAAATGCGAAGTCTGCTTCAAATCTTACCCAAGACGCTGGTCTCTAGCTATGCACATGCGAATACACAACGACGATAAAAGATTTGTCTGTGTACACTGCGGTGCTGCGTTTGTGCAAAAACATGaGTGCGGCAAACGGAGGCTGAAAATCGGGGAGTATCACGACGCGCGAGACAATGCGGCCATTATTCTAGAATATTCCAACGTGTGCCCATTTAAATGGCGCAAAAACGTTTTCGGTTGCTCGTACTGTAGCTTTACTTCCGCAGATTTTGCCCCATTCAAAAATCACATGGCAAGCCATCCGGTTAAATCTCAAAGAATAGAATTCCTGCGTAACTCGCGACCCGCCGATACAGTCAAAACggatattgttgatttaaaatgCGAGCTTTGCCAACAAGCTATCAAAGATATACCGGCACTCATGGATCACCTAAGCGATACACACAATAAGCCTATAGTGAAAAAATACGATTCCGGCATCGTACCGTACTTGCTAGATAATGGTTTCACTTGTGCCTTCTGCGGAGAATCTTTCGACCGTTTCATAACACTAAACACGCACGTTATTCAGCACAAATTAAACTTCGCGTGCTCGCAATGCGGCCAGTATATATCTAGTCCCGAAGGATTAAGAAAGCATATTCTTCGTCGTCACGTTAAAGCTCCGAGAAGCCACTATAGACCTAAACTAAGCGACTATAACGACGCAAGACATAACGCGTCTATTATCCTAGAATGTTCTAATATTTGTCCGTTCAAATGGCATCGAAACGTGTTCAGATGTGGTTACTGCGATTTTAAATCGGCTGACTTCGGACCGGTCAGAGTGCATATTAATAATGTGCATCCAAAGCGACTCGAAGCGCTTCACTACTCTCGTCCTACTGAAATATTCAAAGCAGATGTTACGAATTTAAAATGTGAATTGTGCGACTTATCGATTGAGGATATGAAAAGCTTGATCAATCATCTGATAGACAAACATAATAAGTCAATTAACAAGCACTTTGGCGCTGGTATTGTTCCATTCCTATTATGCGATGGGTTTACCTGTGCCGACTGCGGATTGGCTTTCGATCGATTCATGAAACTAAACATTCATGTAAACGAACACTACCCTAACTGCATCTGCTCGCAATGCGGACAGGCTTTTTCTAGCGAGAACAGACTCCGCGCTCACTCCGAACAGCATAAGAAAAAGATATTACAGTTCAAATGCGGGTCTTGCGGAGAGATATTCAACTCGAGGTCTAGTAAACAAAAGCATATGGAGACTAAACATGATATCCTACCCCATAAATGTCCTTACTGCAATGACGCTTTTAAATCCTACGCGCACAGGTTGCTTCATTTAAACAAGTACCATGGCAAGAAGATAGAGTTCCCCTGTCACATGTGTTCGACCATTTTTAAGACGGCATCTAAAAGAGCTGACCATATGAGGCATATCCATTTGAGGGATAAGCAGTATTCTTGTTCGGTGTGCGATTATGTGTGTACTAGCTTGGCGCAATTGAAAAAACATATGACGAAGCATAGTGGGGAGAGAAAGTATAAATAG
- Protein Sequence
- MGDYRDGRDNATVILGCSNVLPFKWRRNVFGCPSCHFTSPDFTCLKNHIMTNHSLKSNKLDVLKKCRRGDPIKVDVADLKCDLCEQDIDDIPALMDHLNKIHQKHIVKNFDSGLVPYLLGNGFKCAYCGEDFDRKHGKSQITKLPPKNNKSKEGLRRKFNLYGSIKSNAGIVLECSNACLFKWHRNVFGCASCDYTSAEFGPIRAHVEARNCQGHNKRYLRFSDILKVEVTDLKCKLCDKPFNDLKTLLCHLGEVHDEPVEIEHDPGLIPYLLSGGHVCALCGVEFDRFTKLNCHMNEHFPNCVCSYCGQSFVNAFRLKHHIWQHKNGKVNFKCSSCKVTFATRHQKQKHMISKHGKLTYKCPYCNEMFKSYTLRVQHLNKEHGKKIKYSCKLCPEVFKTTYTRAKHVRLVHTESEPLYCPVCNYMCKTATQLKRHMIRHGGERKHKCEVCFKSYPRRWSLAMHMRIHNDDKRFVCVHCGAAFVQKHECGKRRLKIGEYHDARDNAAIILEYSNVCPFKWRKNVFGCSYCSFTSADFAPFKNHMASHPVKSQRIEFLRNSRPADTVKTDIVDLKCELCQQAIKDIPALMDHLSDTHNKPIVKKYDSGIVPYLLDNGFTCAFCGESFDRFITLNTHVIQHKLNFACSQCGQYISSPEGLRKHILRRHVKAPRSHYRPKLSDYNDARHNASIILECSNICPFKWHRNVFRCGYCDFKSADFGPVRVHINNVHPKRLEALHYSRPTEIFKADVTNLKCELCDLSIEDMKSLINHLIDKHNKSINKHFGAGIVPFLLCDGFTCADCGLAFDRFMKLNIHVNEHYPNCICSQCGQAFSSENRLRAHSEQHKKKILQFKCGSCGEIFNSRSSKQKHMETKHDILPHKCPYCNDAFKSYAHRLLHLNKYHGKKIEFPCHMCSTIFKTASKRADHMRHIHLRDKQYSCSVCDYVCTSLAQLKKHMTKHSGERKYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827259;
- 90% Identity
- -
- 80% Identity
- -