Hato033396.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023305.1:12693240-12727727[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 37 0.0099 0.9 11.3 1.0 1 23 230 252 230 252 0.99 2 37 0.4 36 6.2 4.4 1 23 259 281 259 281 0.98 3 37 0.0011 0.1 14.2 1.0 1 23 285 308 285 308 0.97 4 37 0.09 8.2 8.3 1.1 1 12 315 326 315 326 0.92 5 37 0.0011 0.1 14.2 1.0 1 23 327 350 327 350 0.97 6 37 0.09 8.2 8.3 1.1 1 12 357 368 357 368 0.92 7 37 0.0011 0.1 14.2 1.0 1 23 369 392 369 392 0.97 8 37 0.09 8.2 8.3 1.1 1 12 399 410 399 410 0.92 9 37 0.0011 0.1 14.2 1.0 1 23 411 434 411 434 0.97 10 37 0.09 8.2 8.3 1.1 1 12 441 452 441 452 0.92 11 37 0.0011 0.1 14.2 1.0 1 23 453 476 453 476 0.97 12 37 0.09 8.2 8.3 1.1 1 12 483 494 483 494 0.92 13 37 0.0011 0.1 14.2 1.0 1 23 495 518 495 518 0.97 14 37 0.09 8.2 8.3 1.1 1 12 525 536 525 536 0.92 15 37 0.0011 0.1 14.2 1.0 1 23 537 560 537 560 0.97 16 37 0.09 8.2 8.3 1.1 1 12 567 578 567 578 0.92 17 37 0.0011 0.1 14.2 1.0 1 23 579 602 579 602 0.97 18 37 0.09 8.2 8.3 1.1 1 12 609 620 609 620 0.92 19 37 0.0011 0.1 14.2 1.0 1 23 621 644 621 644 0.97 20 37 0.09 8.2 8.3 1.1 1 12 651 662 651 662 0.92 21 37 0.0011 0.1 14.2 1.0 1 23 663 686 663 686 0.97 22 37 0.09 8.2 8.3 1.1 1 12 693 704 693 704 0.92 23 37 0.0011 0.1 14.2 1.0 1 23 705 728 705 728 0.97 24 37 0.18 16 7.4 0.6 1 11 735 745 735 746 0.92 25 37 7 6.4e+02 2.3 0.1 1 8 790 797 790 815 0.64 26 37 0.0002 0.018 16.7 0.6 1 23 822 845 822 845 0.96 27 37 0.00019 0.017 16.7 0.9 2 23 852 874 851 874 0.96 28 37 8.9e-05 0.0081 17.7 0.9 1 23 885 907 885 907 0.95 29 37 0.0026 0.24 13.1 0.2 1 22 913 934 913 938 0.94 30 37 0.00046 0.042 15.5 1.6 3 23 948 969 946 969 0.97 31 37 9.2e-05 0.0084 17.7 0.7 1 23 975 998 975 998 0.96 32 37 2.7 2.5e+02 3.6 1.1 1 10 1007 1016 1007 1019 0.89 33 37 2.7 2.5e+02 3.6 1.1 1 10 1030 1039 1030 1042 0.89 34 37 2.7 2.5e+02 3.6 1.1 1 10 1053 1062 1053 1065 0.89 35 37 2.4 2.2e+02 3.8 0.8 1 10 1076 1085 1076 1088 0.89 36 37 0.00027 0.024 16.2 3.1 1 23 1099 1121 1099 1121 0.98 37 37 0.00029 0.026 16.1 0.3 1 23 1127 1150 1127 1150 0.96
Sequence Information
- Coding Sequence
- ATGGCGCAAAATGCTGAACTATTCATACAAAATGTGCAAAGAAATCAGGTTTTGCTCCAAAACTGCATTGGGGATTTAGTGACCACAATAAAAGAAGCTCGTTCTCAGTTCCATCCATCGATAACCCTCTCCCAATCGCCAGTAAAGTCTATAGATCTCACCGAAAAAAACAATATAGACCTTATAAATTTAGACAATGAGTTCAAAATATATGAACACAGTACCTGCAATACGTTCCAAAATAGCACATACGACGTGATGATTACAAGTGATATCAAAAATGAtgaagaaaattttgaaatggagAAGAGGAATATAAAAGTTGAATTGAAAGTTGAAGAGGATGCAAATTTGGATTTGGAGAATGGAGgattaaatgatgatgatgAATCTCCCGACCAAAAAGATCCATCCATAAAGGAAGAAGAGGTAGACGACTGTTTTCTcctttatttactgaaaaaaGAAGTAAAAACGGAAGTCATTCAGAAGACTGTAACACCGCCCGAAAAACAAGATGTTATTGAAATAGATGGGAATAACGTAAATGACACGATTTTAGATAGAAAAACTCAGATAACGAAACTGAATGAGTCATTAGGAATAAAGAAGATATTAATAACCAAAGAAGAATTAATGGAAGAGAGAAAGCAACAAGCATTGGATAAATCATATTTGGATTGCGCCTACAGGTGTGAAGATTGTATAAAAGGGTTCAACTATAAAGTTGGCTATGACAATCATATGAAGAAACACAGTGAAGAATCGGGTAGATACAAATGTGACATCTGCAAACTCAGAGTGAATACACACGACAAGTTTTCGAGCCATAAACAATATCACACTGTACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGACGTTTCCAATGCACCGAGTGCGGCATAGTGCGCACGAGTCGCTCGACACTGGTGGAACATCACAATGTGAAACATAAACAGGGCGATGATCATTTCGCCTGCCCTTACTGCCCTAAGACTTTTAGGGCGATGACCATTTCGCCTACCCCTACTGTTCCAAGCCTTTGGGATAATTATCTACAAAGTCTCACAGACGTTTCCAATGCTACGACGTTCTTAGACCACCACAACGCGATACTCAAGCAAAGGGAGAGCCAGTTCGCCTGCCCCTACTGTCCCAAACTTTTGGACGTTTCCAATGCCACGACGTTGTTAGATCATCACAATGCGTTACACAAGCAAGGGGAGAGTCAGTTCGCCTGCCCCTACTGTCCCAAGGCTTTTAGAGGCCAAACGTCGCAGAGGAAGCACGTGAGAAACACGCACCAGAAGAGGGAGCGCGTCACCTGCGAGTTCTGTAACAAGACCTATGCTAGTAAAGAAGCTCTCAAGTCTCATAAGATGACACAACATCCAAAAGAAGTGGCAGCGAGAGAGAAAAGGTACCCCTGCGAGGAATGTGGCAAACTGTTCCGCTCAAGCACATCACTCAAAGTCCACAAATACAACCACTCCGCCACCCGGGACTACTACTGTGTGGAGTGTGACAAGGCGTTCAAATCGGAAGCCATTTTGAAACAACATTTAAGGAAGGCACAACCCCATGTTATTTACTCGGACCTGCCGTTCGGTTGTGAGAAATGCGACAAAAGATTTGCGCTACGACATGATATGGAGCGGCACATGAACAGCATCCATCTCGAGTCTAAAGATTTCAAATGCGATAAATGCGATAAGGCGTACGGAAGCAAAAAGTCCCTGAGAGTCCACGAACAGAGCGTGCATGAGGGATATAAAAGACCGCTGCAGTTCCCCTGCCACTTCTGTAACAAGATATTCGACGTAAGTATAGTTCAGGGATATAAAAGACCGCTGCAGTTCCCCTGCCACTTCTGTAACAAGATATTCGACGTAAGTATAGTTCAGGGATATAAAAGACCGCTGCAGTTCCCCTGCCACTTCTGTAACAAGATATTCGACGTAAGTATAGTTCAGGGATATAAAAGACCGCTGCAGTTCCCCTGCCACTTCTGTAACAAGATATTCGACGCAAGTATAGTTCAGGGATATAAAAGACCGCTGCAGTTCCCCTGCCACTTCTGTAACAAGATATTCGACCGCAAGACAATCCTCAATAACCACATCCGCACGCACACCGGTGAGCGTCCCTTCCAATGCGACAAGTGTCCCGCCAATTTCAGCCAATCAGGATCCTTGGCCACGCACAAGAAACTCGTGCACCAACGACTTACGAGAGATGGGAAACCCAAGCGAAATGCCGGACTCAAAcatatttag
- Protein Sequence
- MAQNAELFIQNVQRNQVLLQNCIGDLVTTIKEARSQFHPSITLSQSPVKSIDLTEKNNIDLINLDNEFKIYEHSTCNTFQNSTYDVMITSDIKNDEENFEMEKRNIKVELKVEEDANLDLENGGLNDDDESPDQKDPSIKEEEVDDCFLLYLLKKEVKTEVIQKTVTPPEKQDVIEIDGNNVNDTILDRKTQITKLNESLGIKKILITKEELMEERKQQALDKSYLDCAYRCEDCIKGFNYKVGYDNHMKKHSEESGRYKCDICKLRVNTHDKFSSHKQYHTVRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRRFQCTECGIVRTSRSTLVEHHNVKHKQGDDHFACPYCPKTFRAMTISPTPTVPSLWDNYLQSLTDVSNATTFLDHHNAILKQRESQFACPYCPKLLDVSNATTLLDHHNALHKQGESQFACPYCPKAFRGQTSQRKHVRNTHQKRERVTCEFCNKTYASKEALKSHKMTQHPKEVAAREKRYPCEECGKLFRSSTSLKVHKYNHSATRDYYCVECDKAFKSEAILKQHLRKAQPHVIYSDLPFGCEKCDKRFALRHDMERHMNSIHLESKDFKCDKCDKAYGSKKSLRVHEQSVHEGYKRPLQFPCHFCNKIFDVSIVQGYKRPLQFPCHFCNKIFDVSIVQGYKRPLQFPCHFCNKIFDVSIVQGYKRPLQFPCHFCNKIFDASIVQGYKRPLQFPCHFCNKIFDRKTILNNHIRTHTGERPFQCDKCPANFSQSGSLATHKKLVHQRLTRDGKPKRNAGLKHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -