Hato025827.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- clz9
- Assembly
- GCA_964007245.1
- Location
- OZ023298.1:11859857-11862148[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.6e-09 1.9e-06 28.6 0.1 1 42 14 56 14 59 0.86
Sequence Information
- Coding Sequence
- ATGGTGCGGaactacaaaagaaaaaaagagaaaaaatatacTCAAGAACAGCTTATTGAAGCAGTTGAAGCAGTGcgttctaaaaaaataaatagctacagCGCTGCTGAACAATACGGGATCCCAAGGTCTACTATTATTGCACGGCTATATGGTACTCGTGGAAGTAAAATGCCTAGAGCTGGAAGGCCTGGAGTATTTTCTGTAGAAATGGAAACGAAAATTGCATCATATATCCATATTCTGGAGAAATGTGGATATCCGTTAACAAAAAAAGAGAATATTTCTATGATTTCCGAATATATTCGCCGTAATGGAATCATAACTCCATTCACAAATGATATCCCAGGAAAAGAGTGGTTTCAAGCGTTCCGTAAACGGCATAAACTCTCTTACAAAAAACCACAATCAGTTGAAATTGCAAGGAAAAAAGCTTGCAACCCTTTTATcatttacgagtattttaatttacttgaaAAAGTCACGGATGAATTGGAGCTAATGAACAAGCCTGATCAAATCTTCAACTTGGACGAGACTAGTTTTTGCTCGGACCCATCCAAAAGTAAAGTTGTTGGGTTGATGGGATACCAATCTACTAGAACGACCAGTGGCCCAGGACGTGAAAACACAACTGTTTTGCTTGCTACCAGTGCCAGTGGTACAAAATTACCACCATTGGTAATAATCCAGGGAAAATACCTCTGGAATGAGTGGATGTACCAAAATGATAGTGTAAAAACCGCATATGCGGTTAGTCAAAAGGGATGGATGGAGACGActatattcgaaaaatatttaaaagatgTTTTTATACCCGCAATCGGTGACAAAAGGCCCGTGTTACTGGTATACGATGGACATTCAACCCATGTAGATTTAAGCGTGATAGAACTAGCAGCATCTAATGGGattaccattttaaaattaccCCCACATTCGTCTCACGTGCTACAACCTTTGGACTGTAGCACGATGAAACCAATGAAAGACAAATGGGAAGATGCCCTTGTTAAGTGGCAGCGCTTGCACATAGGTATGAAATTGCCAAAAGCAGAATTTGCTCGCATCATTACCGAAATTTGGGATTCTCTAAATCCTGTTATACTACAAAACGGGTTTAGAAAAACGGGAATTTTTCCCATTAATAGACACGCAATCCAAGAGGAAAAATTTGATTCCTTGTCATTGATGAAATGGAAACAACATATTGAAGAACAGTCGGTTGCAAATCCAAGTCAAGAGCAAATTCGACTTCCAGAACAAGTTATTCATGTTTCATCCGTTGAAAGCAAAGTATTATCAGTGGATGAAACAAATTGCCCAACAGTCAAATTCGTACGAAaagttaaaaacttaaaatctGAGAGGGGTACCACATTTACCTACCCGACCATAAATGACATTTGCGTCATTAAACATAATGACGACATACTTAAAATTTTGCCTGTACCAAACATTGCTCGACGTGGACAGTTAATATTCGATTTCGATTTTACTGATTTCAATTTGCAATAA
- Protein Sequence
- MVRNYKRKKEKKYTQEQLIEAVEAVRSKKINSYSAAEQYGIPRSTIIARLYGTRGSKMPRAGRPGVFSVEMETKIASYIHILEKCGYPLTKKENISMISEYIRRNGIITPFTNDIPGKEWFQAFRKRHKLSYKKPQSVEIARKKACNPFIIYEYFNLLEKVTDELELMNKPDQIFNLDETSFCSDPSKSKVVGLMGYQSTRTTSGPGRENTTVLLATSASGTKLPPLVIIQGKYLWNEWMYQNDSVKTAYAVSQKGWMETTIFEKYLKDVFIPAIGDKRPVLLVYDGHSTHVDLSVIELAASNGITILKLPPHSSHVLQPLDCSTMKPMKDKWEDALVKWQRLHIGMKLPKAEFARIITEIWDSLNPVILQNGFRKTGIFPINRHAIQEEKFDSLSLMKWKQHIEEQSVANPSQEQIRLPEQVIHVSSVESKVLSVDETNCPTVKFVRKVKNLKSERGTTFTYPTINDICVIKHNDDILKILPVPNIARRGQLIFDFDFTDFNLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01182742;
- 90% Identity
- -
- 80% Identity
- -