Hato017877.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023291.1:19222376-19224145[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-09 1.2e-06 29.3 0.1 2 44 17 59 16 60 0.96
Sequence Information
- Coding Sequence
- ATGGTCCGAAACTATCAAAGAAAAACCGACCGAGCGGCTGCCTATAGCAGAGAACATTTATTAGAAGCTGTGGAAAAGGTTAAGAGCGGCGAGTTGTCAGCTTACAGAGCTTCTCTGGCATACAAAATTCCCCGACCAACCATAGTAGCCCGAGTCCACGGTAGATATGGATTAAAATCTAAATCTTTAGGGAGAAGTACAGTTCTTACTCCAGAGACAGAGAAAAAATTAGCCAAAAACCTacatattatggaaaaatatggaTTTGGTCTCAACAGACAAGAAATGTTGGAACTTGTTGGAAAATATATTGCCAAAAATAATATccctaataattttaaaaacggcATGCCCGGAGAAGATTGGTTTTTATTGTTTAAGAACCGGCATGCTTTGTCTATTAAGAAACCTCAAGCCGTGGAAAATTCGCGTAAAAAAGCATGTAACCCGTGGGTTATTTActcttattatgatttattgaaAAAGACCTTGGATGAGCTGGACCTGCACGATAAACCATCACAAATTTGGAACTTGGACGAAACGAGCTTTAGCAAGGACCCCAGCAAAACCAAAGTCGTAGGCCTTCGTGGTTATGCTTCGACGAGAACAATTGCATCACCTGGCAAAGATAACACAACAGTTTTGTTGGGATGCAGTGCAGCTGGTGGCAAAACACCTCCGCTTATAGTATATAAGGGCAAAAATCTTTGGGACGAATGGATTTCAGAAGAGGGCTTTCCCGGAACTGTTTATGCGGCTACTACGAACGGATGGATGGAGACTGAGgtatttgaaacattttttcaaaaggTGTTTCTACCCACCGTAGGTGATAGACGGCCAGTATTATTGGTTTACGATGGTCACTCTACGCACGTAGGGATCAATATTATCGAAAAAGCAAGAGATGCAGATTTTACCATACTGAAAATTCCACCACACACGAGCGATAATTTACAGCCGTTGGATTTAGCTGTCAACAAGTCGTTTAAAGACAAATGGGACCAGAGTTTAGTTAAGTGGCAAAGGCTACATGTTGGTCAAGCTTTgcctaaaaaagatttttcaaaattgattGGTCAAATCTGGGCCCAAATTGATCCCCAGGTTTGCGTAGCTGGGTTCCGTAAAGCCGGAATTTTTCCCTTTAATAGCAACGCAGTCCCTCAAGAAAAATTTCACCAGGACCAACTTATGGAGTGGAAAAGGCAACAGGAACAGCCCACCAAACGTAATGAGATAACCACGTCATCTACTACTATTTCAAAAGATCTCAGGGTTCAGATCCAAACTGCAGTTCAGCTACTTCCTGGTACTTCATCAACTAAAGAccagttttttatttcaaaacaatctGATAGGGTGGTTGAAAAAGTGTTAAGACCATTTTTGGTTCCTTCATTGCTGTCTGTTTGCTTGAGTCGCTGGAATTGTTGTAATCAAGCAAATATCGCATCGGAGCAGGTCCATATCGAGCAGTCTTTTGTTGCAAAGAACTCAAAACCCTCAACGAGTATCGCGTCGGAACAGGTTCATAACGAGCAATCTTTTATTGCAAAGAACTCTAAATTCCCAAAAGTTACTATTCTCGAAGATCGTCCTGTTAAGCTCAACGTTACTTTTGAAGATCTCTTGCTCGAAAAAATAAGCGCAGGAACGCATAATGTTAATAAGCGCAAAAAAATAGCTAGTGGGGCCGAAATAATAACATCTGAAGGTGTATACAGAAAACAAAAAGAACTTAAGAAGAAAAAATCAGaaaactga
- Protein Sequence
- MVRNYQRKTDRAAAYSREHLLEAVEKVKSGELSAYRASLAYKIPRPTIVARVHGRYGLKSKSLGRSTVLTPETEKKLAKNLHIMEKYGFGLNRQEMLELVGKYIAKNNIPNNFKNGMPGEDWFLLFKNRHALSIKKPQAVENSRKKACNPWVIYSYYDLLKKTLDELDLHDKPSQIWNLDETSFSKDPSKTKVVGLRGYASTRTIASPGKDNTTVLLGCSAAGGKTPPLIVYKGKNLWDEWISEEGFPGTVYAATTNGWMETEVFETFFQKVFLPTVGDRRPVLLVYDGHSTHVGINIIEKARDADFTILKIPPHTSDNLQPLDLAVNKSFKDKWDQSLVKWQRLHVGQALPKKDFSKLIGQIWAQIDPQVCVAGFRKAGIFPFNSNAVPQEKFHQDQLMEWKRQQEQPTKRNEITTSSTTISKDLRVQIQTAVQLLPGTSSTKDQFFISKQSDRVVEKVLRPFLVPSLLSVCLSRWNCCNQANIASEQVHIEQSFVAKNSKPSTSIASEQVHNEQSFIAKNSKFPKVTILEDRPVKLNVTFEDLLLEKISAGTHNVNKRKKIASGAEIITSEGVYRKQKELKKKKSEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00826852;
- 90% Identity
- iTF_00825607;
- 80% Identity
- -