Hato020775.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypomecis atomaria
Gene Symbol
-
Assembly
GCA_964007245.1
Location
OZ023294.1:5072867-5075350[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.2e-08 1.2e-05 26.1 0.0 1 35 15 49 15 52 0.95

Sequence Information

Coding Sequence
ATGCCGAAAACAACAGAAAACCAAccctacctaaaaaaatatacggaGGAAGAGATCCAGAAGGCATTGGCAGCTGTCAAAAATGGAATGTCAAAAAAACTGGCTGCTGCAAAGTTTAATGTGCCTAGGGCAACCATTCAGTTTAGGTTaggtaacaattttattaaaactagACCAGGTCCGAGCACTGTATTAACAGCTGAAGAAGAAAGCGAAATTGTAGGATGGCTCATGGCAAGCAGCAGAAAGGGTTTCCCAAGAAAAAAAAGCGACATATTAGACACCGTGCAAGAGTTTCTTGTAAAGAACCCAAGAGAAAACTCTTTTATTGACAATCGCCCTGGAAAAGGGTTGTTCAAATTGTTTTTACAAAGACATACAGAGCTTTCTTTAAGACAGTCGGAAGCGGTAACATCAGCTAGCTCTAAAATAAGCGAAACTGATATAAGAAACCGGTTTCGTCAAATTGAAGACTATTTAAAAGAAATGCAGTATGATGAAATCTTGAATGACCCTTCTAGGGTCTTCAATGGGGATGAGACTGGGTTTTTGTTTAACCCCAAAAACATTAAAGTCATCGCCCCAAAAGGTGACAAAAATGTTTACGAGGTGGAGCACGCTCCAAGCAAGACATCACTAACTGTAATGTTTACATTTTCCGCGAGCGGGGTTACTACACCACCTATGGTCGTGTATCCATTAAAAAGAATGAGAAATGAGATATTACGATCTGTGCCAGAGTCATGGGGTGTAGGAATGTCAGAAAACGGATGGATGAAAGCTGAGACTTTTTACAACTATATAAAAAATGTGCTTTATCCGTTTCTGGTAAACAAAATTACACAATTTCCAATCATATTGTTTGTCGACGGACATAAATCACATACAACATTGGAACTGTCACAAATGTGTGAAAAGTTAGGCATTATACTGATTTCTTTGTACCCCAATGCAACCAGAATCTTGCAACCCGCAGACGTAGCTGCCTTCCGTCCAATTAAGTCAGCGTGGAAAAAGGCTGTTTTGGATTGGCGAAAAGAAAATCTAACGAAAACTCTGACCAAAGTTGATTTTGGTCcaattttagtgaaaatagTTGACAACCACATAAACCCAAATATTGTGAAGAATGGATTTCGTGCATGTGGGCTTGTCCCCTGGAACCCAGATGCAATTGGTTATTCAAAGTGCTTGGGCGGAACTCGGGTGCAACAAGCTAATAATAAAAACGCGGTTTCAACAGATAATATCAATATAAGCTTCGACAATTTCCAAAATATTGTTGGACCGACAGTGATGCGACGACTACAAAATGGTAATGTTGTAAAATCAGGTGAAGGAAAAGCATTGCTgaagatttataaatatttcctTCTTGCAAATCCAACAAGACAAGAAGAACAGTTGGATGACGATTTTGTGCACATTGATGTTAGAGAAAATGATCTCTCTAACATCAATGCAGACGAGAACATCAGTGAGACTCAGAGTGTAGAAAGCCATAAAAAAGAGATAGCAAGAGAAAACATTACAGAGGCTCAGAGTAGAGAAATAGATGAAGAAAGAGAAAACATAAcagaaaaattgaataaaaacacTGATAGAGAAGAGACACTAAAAGAAAACATTGAAAATGTCTTCGTGGGCACACATGCAGACATAAATGAATTCAACAACATTACCGACGATGTTACTGAAATGacacattttaatataaatggGGTATTAGTACCCATTGATAATGTGCCAATTTGTATGCCAGAAGAGGTAGCTATGAACAATAGTACAGAAGTGAATACCTCAAACAAGGACAGGACAATATCACCTATGACGAATACAAATGCAGCTACTTCTGCAGCAGAGTTCATTCCAGAACCATGCTGTTCAttcataaaacagtttaatGAGTCTACACTACAAAAGCAACCACCTACATTACGAGAAACTTTAATAATTCCCAAAACACCTATTAAAATCagcaaaatgaaaattataaagcAACCTTTTGTTTTAACCAGCAAAGTCTGGCAGAAGATTCAAACTGATAAACAagatgagaaaaataaaataataatagaaaaagaAGAGAGAAAACGTATAAGGGAAAAAAAATCTCGCGAGAGAAAAGAAACAATAGAagcaaaaagaaagaaaaaagccGAAAACACTAAGACTACTAAGAATAAAGCCAAGAACGCTactctaattaaaaaaacaaaaaaggatTCTAATTCTGTAACGATTGAAAAAGAATGGGCTGGTAAAAAGCATGACTTATCAGAACCACAAGATTCAAAACCAAATTCCAGTGGCAAACCCATAATACTATCGAATGTAATAGTAAATTCAACAATACGCAACAAAAACACATTGACAACCACATATTCAGTTCTTTCTATTAAAGATATAGAAGTAACAGATGAAatacaaaaatctaatttagAAAAACCGATAAAAAAGGAGAAGATTGCTGAAAGTAAATAA
Protein Sequence
MPKTTENQPYLKKYTEEEIQKALAAVKNGMSKKLAAAKFNVPRATIQFRLGNNFIKTRPGPSTVLTAEEESEIVGWLMASSRKGFPRKKSDILDTVQEFLVKNPRENSFIDNRPGKGLFKLFLQRHTELSLRQSEAVTSASSKISETDIRNRFRQIEDYLKEMQYDEILNDPSRVFNGDETGFLFNPKNIKVIAPKGDKNVYEVEHAPSKTSLTVMFTFSASGVTTPPMVVYPLKRMRNEILRSVPESWGVGMSENGWMKAETFYNYIKNVLYPFLVNKITQFPIILFVDGHKSHTTLELSQMCEKLGIILISLYPNATRILQPADVAAFRPIKSAWKKAVLDWRKENLTKTLTKVDFGPILVKIVDNHINPNIVKNGFRACGLVPWNPDAIGYSKCLGGTRVQQANNKNAVSTDNINISFDNFQNIVGPTVMRRLQNGNVVKSGEGKALLKIYKYFLLANPTRQEEQLDDDFVHIDVRENDLSNINADENISETQSVESHKKEIARENITEAQSREIDEERENITEKLNKNTDREETLKENIENVFVGTHADINEFNNITDDVTEMTHFNINGVLVPIDNVPICMPEEVAMNNSTEVNTSNKDRTISPMTNTNAATSAAEFIPEPCCSFIKQFNESTLQKQPPTLRETLIIPKTPIKISKMKIIKQPFVLTSKVWQKIQTDKQDEKNKIIIEKEERKRIREKKSRERKETIEAKRKKKAENTKTTKNKAKNATLIKKTKKDSNSVTIEKEWAGKKHDLSEPQDSKPNSSGKPIILSNVIVNSTIRNKNTLTTTYSVLSIKDIEVTDEIQKSNLEKPIKKEKIAESK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01569256;
90% Identity
iTF_00926550;
80% Identity
-