Basic Information

Insect: Hypomecis atomaria
Gene Symbol: -
Assembly: GCA_964007245.1
Location: OZ023280.1:1347469-1349889[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.3e-10 9.7e-08 32.8 0.0 1 45 12 56 12 56 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.3e-10	9.7e-08	32.8	0.0	1	45	12	56	12	56	0.95

Sequence Information

Coding Sequence: ATGTCGCCTCGTAAAAAGAGGGGAGAATCTTGGTCAGAAGACGATTTGAAAGCCGCTTTGAGAGCTgttaaaaaagggaaattaaGTCAGCGAGCCATATCTCTCAAGTATAACATTCCGCGACGAACATTGAGGGACCATATGAAAACCGGCCAAGACGTAAAACGTATGGGACGAAAACCTATTTTAACAGAGGCTCAGGAAAATGATTTGTGTGGTAGAATCAAAAGGTTTGCAAAAATCGGAATACCTCTCACACCTAAATTTATCAGAAAACAAGCCTTTATGTTTTGCGAGAgatttgacataaaaaataatttcaattctaCAAAAAGGATTGCGGGTGCTGATTGGCTAAGGCAGTTTTTAAAGCGAAACCCAACGATCACTAAACGAAAACCACAAATATTAAACCCAGCGCGAGCTCAAAAACTTAACAAAGCAATAGTTAGGGAACATTTTCAGAATGTAAAAGAAATATACGAACCATTAGATATTCTTCAACATCCTGAAAGACTATACAACATGGATGAGAAGGGTTGCCGAATTACAGTCCACAACCAGCACACGGTACTTGCGGAGAAAGGAAGTAAAAGAGTACATCTTATTGCACCCGAACATGCCGAAAATGTGACCATAGCAATGTGTGTTAATGCCATAGGAACCGCGATTCCTCCCATGATTCTTTTTAAAGGGCAAAGACAAAGACCAGACCTTTCAGAAAACTTACCTGCCGGAACTTTAGTAAGAATGGCGCCGAAAGGGTCCATGACTGCCGATTTGTTTGTAGAATTTATCCAGCACCTAGCCAAATACAAAGTTGCGGGAaaatgtttacttgtttttgatGGCGCTAAGTGTCACTTATCAGTTGAAGCACTCGAAGAAGCTGATAATAATGACATAGTGCTATACTGCCTTCCTTCAAATACAACCCATGAATTACAGCCTCTGGATAAGTCCGTAAACAAGTCTTTTGAACATCATTGGGACGAAGAAGTCTTAAACTATTTATGTGCAAGCGCCGACAGAACACTCACAAAAGCtacattcaataaaatatttactagagTTTGGCCCAAGTGTATGACGCACAGCAATATAGTCAATGGGTTCAAGGCAACCGGTCTCTTTCCCTTCGATCCCCAAGTTATACCAGAGGAAGCATTTGCCCCATCTGTTTTGTCGGAAATGCCATGCCCGCGAACCCAGGAACCTCTGCAGAATCTCATTTTAAACTCATTAGATGATAGCACTGATAGTGATGACATTAATGAAGATCATGATCACCATTTGGCTTTAGTTACTGAGTTATCTACTATTCAGAGAAAATCTGACTTacttaatgaaaatattaaccCAGTTAAGTCCCGTCTTGTGGATTACAGCTCGTCATCCGATAATTCTGACATAGCATCAATTTGGCCGAACCTTAAATCACAAGTTATGATAGAAGAAGATCGTGATTCACCTTCCTTAATACCAGATACCAACTTAATTGGTATTTCTCAATTTGATTCCTCACACTACAATGGCGATAAACATTTAGGACAACATGATCTGGCCGTTCCCAGCTGTTCAGGATTACAAAAATCTTTACGTGACGATCCGGGTTCTGAttcaacgatttctgatttGGATTCATTCGTTACTAGGCCTCTTTTCAATCAATCCAAATATGTTGCTGATGATATCTATAACTACACATCAGACGAATCATCAAGAGATGGAAGTCAGTGTCATCTCAACAAAGGAACAAAAACACCGAAAAAACAAATGATCTGTCCTATTCAAAATGAAACTTGCAACCTAGATGAAGACAACAGTCATCTCAACAAAGGAACAAAAACACCGAAAAAACAAATGATCTGTCCTATTCAAAATGAAACTTGCAACCTAGATGAAGACAACGTACCATTAGCCAGTTTACAACAAGAGAATAAAACGCAATTTCAACAATTCCTACCTACGCctaattatgcaaaaaataaatcttcaaaaccacgtaagaaagcGATGAACTATAAAGGGCAAAGAATCACTAAGGATTTATTCAATGATAAAACTGAaactaaaaaatctaataaacaaaattacagtAGCATGAAGAAAACTAAGAAAGAGCAGAAAAAGCTACACATTTCTAAAACACAAAAGACGAATGacaaaagagaagaaaaaataagtgagaAGAAATTAGAAGAAAGacgtgaaaaagaaaacaaagcgAAAGACACTAAAAATAAGACTAAGAATAAAAAGAAGATGAACGGGAATAGCGATGAAGTCTGGTACTGTAATGCTTGTGGTGAGATAGAGGAGTTAGACATGGCGCAATGCATAGTATGTAAGAGATGGTACCATGAGGAATGCGTAGGCCTCTCCGAATGTGATATAGAGTTTATTTGTccatattgttaa
Protein Sequence: MSPRKKRGESWSEDDLKAALRAVKKGKLSQRAISLKYNIPRRTLRDHMKTGQDVKRMGRKPILTEAQENDLCGRIKRFAKIGIPLTPKFIRKQAFMFCERFDIKNNFNSTKRIAGADWLRQFLKRNPTITKRKPQILNPARAQKLNKAIVREHFQNVKEIYEPLDILQHPERLYNMDEKGCRITVHNQHTVLAEKGSKRVHLIAPEHAENVTIAMCVNAIGTAIPPMILFKGQRQRPDLSENLPAGTLVRMAPKGSMTADLFVEFIQHLAKYKVAGKCLLVFDGAKCHLSVEALEEADNNDIVLYCLPSNTTHELQPLDKSVNKSFEHHWDEEVLNYLCASADRTLTKATFNKIFTRVWPKCMTHSNIVNGFKATGLFPFDPQVIPEEAFAPSVLSEMPCPRTQEPLQNLILNSLDDSTDSDDINEDHDHHLALVTELSTIQRKSDLLNENINPVKSRLVDYSSSSDNSDIASIWPNLKSQVMIEEDRDSPSLIPDTNLIGISQFDSSHYNGDKHLGQHDLAVPSCSGLQKSLRDDPGSDSTISDLDSFVTRPLFNQSKYVADDIYNYTSDESSRDGSQCHLNKGTKTPKKQMICPIQNETCNLDEDNSHLNKGTKTPKKQMICPIQNETCNLDEDNVPLASLQQENKTQFQQFLPTPNYAKNKSSKPRKKAMNYKGQRITKDLFNDKTETKKSNKQNYSSMKKTKKEQKKLHISKTQKTNDKREEKISEKKLEERREKENKAKDTKNKTKNKKKMNGNSDEVWYCNACGEIEELDMAQCIVCKRWYHEECVGLSECDIEFICPYC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00826817; iTF_00825570; iTF_00826818; iTF_00825571; iTF_00826819; iTF_00825572; iTF_00826820; iTF_00825573; iTF_00826821; iTF_00825574; iTF_00826822; iTF_00825575; iTF_00826823; iTF_00825576; iTF_00826824; iTF_00825577; iTF_00826825; iTF_00825578; iTF_00826826; iTF_00825579; iTF_00826827; iTF_00825580; iTF_00826828; iTF_00825581; iTF_00826829; iTF_00825582; iTF_00826830; iTF_00825583; iTF_00825584; iTF_00825585; iTF_00826810; iTF_00826811; iTF_00826812; iTF_00826813; iTF_00826814; iTF_00826815; iTF_00825568; iTF_00825600; iTF_00826816; iTF_00794380; iTF_00794381; iTF_00794382; iTF_00404687; iTF_00794427; iTF_01166559; iTF_01166557; iTF_01166558;
90% Identity: iTF_00826817; iTF_00825570; iTF_00826818; iTF_00825571; iTF_00826819; iTF_00825572; iTF_00826820; iTF_00825573; iTF_00826821; iTF_00825574; iTF_00826822; iTF_00825575; iTF_00826823; iTF_00825576; iTF_00826824; iTF_00825577; iTF_00826825; iTF_00825578; iTF_00826826; iTF_00825579; iTF_00826827; iTF_00825580; iTF_00826828; iTF_00825581; iTF_00826829; iTF_00825582; iTF_00826830; iTF_00825583; iTF_00825584; iTF_00825585; iTF_00826810; iTF_00826811; iTF_00826812; iTF_00826813; iTF_00826814; iTF_00826815; iTF_00825568; iTF_00825600; iTF_00826816;
80% Identity: iTF_00826817; iTF_00825570; iTF_00826818; iTF_00825571; iTF_00826819; iTF_00825572; iTF_00826820; iTF_00825573; iTF_00826821; iTF_00825574; iTF_00826822; iTF_00825575; iTF_00826823; iTF_00825576; iTF_00826824; iTF_00825577; iTF_00826825; iTF_00825578; iTF_00826826; iTF_00825579; iTF_00826827; iTF_00825580; iTF_00826828; iTF_00825581; iTF_00825582; iTF_00825583; iTF_00825584; iTF_00825585; iTF_00826810; iTF_00826811; iTF_00826812; iTF_00826813; iTF_00826814; iTF_00826815; iTF_00825568; iTF_00826816;