Hato026066.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023298.1:16477511-16478284[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-12 8.2e-10 39.4 0.1 1 39 12 50 12 55 0.87
Sequence Information
- Coding Sequence
- ATGTCTCCATCAAAACCCAAACGTGCTACTTGGACAGAAGCTAACTTGGCAGCGGCAGTAGACGCAGTGCGCCGGGGTTGTTCAACTTACCAAGCGTCTTCGCAATATGGAATACCAAGAAGAACGCTCAGAAATCATGTTGCAAGTGGTAAGGTACAAAAACGCTTAGGTAGACAGACAATATTAAGCAAAGACCAGGAGAAAGATTTTGTGAAACGTATCATCAAATTTTCGGAGCTGGGAATACCGCTTACGCCCAAAATGATAAGAATACAAGCCTTTgcattttgcgaaaaatttaacataaaacacaatttcaataGAAATACGGGGCGGGCTGGAAAAGAAAGGAAAGGATGGCTGAGGTTATTTTTGAAACGAAATCCTGAGCTAGCCAAACGTAAAGCTCAAATGTTAAATCCAGCCCGCGCTCAAAAATTGAATAGACCTATTGTTGATGCGCATTTTCATGAAGTTAAGAAGCTATATGATGAATTTGACTTGAACGACCACCCCGAAAGAATCTATAATATGGATGAAAAAGGATGTCGACTTACACTTCATCGACAACCAATAGTCATCGCCCAAAAAGGTGCCAAAAGGGCGCATTTGCAAGCCGCCGAGCACGGGGAAAACGTCACAGTGGTCGGTTGTGCTAACGCACTGGGTAATGCTGTTCCACCGTTAATTCTTTTCCAAGGAAAAAGGAAGAAATCTTCGAGGCAAATCTACCACCAGGATCTACAGTTCTTATGGCACCAAAAGGCAGCATGA
- Protein Sequence
- MSPSKPKRATWTEANLAAAVDAVRRGCSTYQASSQYGIPRRTLRNHVASGKVQKRLGRQTILSKDQEKDFVKRIIKFSELGIPLTPKMIRIQAFAFCEKFNIKHNFNRNTGRAGKERKGWLRLFLKRNPELAKRKAQMLNPARAQKLNRPIVDAHFHEVKKLYDEFDLNDHPERIYNMDEKGCRLTLHRQPIVIAQKGAKRAHLQAAEHGENVTVVGCANALGNAVPPLILFQGKRKKSSRQIYHQDLQFLWHQKAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -