Hmis018766.1
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- -
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000023.1:13491434-13502248[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.33 29 6.1 0.2 2 21 1562 1581 1561 1582 0.87 2 7 7.8e-05 0.0069 17.5 0.8 2 23 1684 1705 1683 1705 0.95 3 7 0.00048 0.042 15.1 4.0 1 23 1722 1744 1722 1744 0.98 4 7 0.0055 0.48 11.7 4.2 1 23 1784 1806 1784 1806 0.98 5 7 0.23 20 6.6 5.0 1 23 1830 1852 1830 1852 0.93 6 7 0.02 1.8 9.9 0.5 1 20 1876 1895 1876 1897 0.94 7 7 0.6 53 5.3 0.8 5 23 2247 2266 2244 2266 0.90
Sequence Information
- Coding Sequence
- ATGGATAGATTAAATCAGATACGGGGCGAGGCGGGAAGCTCGCGCGACTTGACGTTGGACACGACTTCCCCGCCAAGCGAGGCCTTCATGACGGCGAACGAGAGTTCTTCCAAATATTTTACGCTTTCTGAAGTCGATTCAACTTTTAGCATATCTCCTTCGAAAGACTCACTAACGGCGACTAGCACCGACCCAGACCGGACCATCACCACCGATACAGAGTTGATATCGAATCTTTCACCGATTCCAAAAAAGAGTGATTTAGATAGTTATAAAATTGGTAAGCAAATAGAGGCGGCTAATATTCTCTCCGGTGGTGTTAATATTTTCGATGATAACGACAATTCCTATGATGGCGACGAGCTGGTGATAGACGACAATGTTATTGTAGAGGATGAGAAAGCTAGTGCAGAATTGAAGTTGAACGAGACTACAGAGCTTCCATTAGACAAAACAGAGAATTTGGAAACATTAGAGGATACGGAGACTATACCGAGTAAGGATACTGAAGTGGTGCTACAAATAGATGGAAAGAATGTTGATGCTATTGATATTGGAAacggtttatatttatatagaaaagctGGCGAGGAGGAACTAGCTGCTGTACAGATTATCGATGATGATCAACAACAGCCAagctttaaatttttgaaagtgCGAGAGAATGCAGAAGGGAATTTAGAAGTTTATGAAGagattgaaattgaaattcCAAAAGAAGTGccTACCAAAGAAGGAAATCCAGCTGGAAATACTTCTTCTCATGTGCCTATAAAGGATATAAGTAAAATGATAAATGAGCCTATAGGCAATAAAGTtgtcgaaaaaataaataaaacaccaaagaatgaatcaaatattaataatgatttgaGTTCAGAACCTAATGTGGACTtacaaacagaaataaaaactgAAGTCAATTTAAATGGTAAAATGGTGAAATTTAATGAATCTCGTAAATCTCCACTAATAGGTACCTATACTCCTATGACATATCATTCAACACCAAATAAAGAGGGCATACCCTTAACAAAGACGATGGTTGATCAACAGTTACATCCTAGTAGACATTCAGACAATATCAAAAAGACTATTGAAGTACACACAGATAGTTGTAGACAGAAGTTATGGGAAACtcctttgaaaaataaagatgtAAATGAAATATCCAAAACATCAGAAGTTATTACTGACAATCAAGACACTGTAGAGAGTGTAGTTGAATCAGTTAGTCCTCAAGAAGATATTAATGAGAAACAATCGGAAAATGAAATTAACTTAAAAGTTGTAGATTCTATTGATGTTTCTGAATCTATTGAAGAAGAAAGAAAAGTTGAAGAAAATTGTATTtccgaaacaaaaaatattgaaaatttgaaaactgATGAGGAGCATAAAGCAGAAGAATTAGTAGAAGAAAGTCCATCAAAGGAAGAAGAGATTAAAGACGAAAACAGAAAAAAAGAAGAGAAGGTTGAGTTAATAAATGATTCTGTTGAAGAAAATatcaatgaaattataatttctcAAGATAATGAAGTTAAATCTTGTGTAGACGAAAATAGTGTTCCAATTGCTGAAGAAATTCAAAGTAAACtagaaaaagaaacattaagtgatttaaatataaataaggaaaCTAAAGATATCAAAGTTAATGATGATATAATAGAGATCGACAATGTCAATAATGACAATGTGGCGATAGAACATACAGAAGAAAATCATATCGATACAAAATTGGATGAAAATCCGTTGTCTATTGACAATGCTGTAGATACGaataatgaaaatcaaaaagaagataaattaatagaaacaaaaaatcttAGTAAAGATATCAAATGTGTGGATTCTGAATCCGCCAATGAAGTGAATAAAGCTACTGAGATAATGTGTGTCGAAGAAACGATAATTAGTGATGAGGTTAAAACTGACAATATagaaactgaaataaaaaatgtagtagAAAGTTCTACTGATAATATAACAGGAATAAGTAAAGCAAGTTCTGAACCCGTTTtaactaatcaaaataaaaaggtaGAGGAATGTAAAGATAATGATGTCCTCCAAAATGCTCCTAGTACAGGAACTctgattttaaatgataataatgatgaagataaaaatttaaaagacaatAAAGATAAAACATCTGATACTCATTCAGAAACCACTAATGCATTGCAAGAAAAACCTGTAATCGTATCTGCAGAAAATGAAAAATCTAGTTTAAAAGACATAAAGAATGTGAATACAATGATCCAGGCAGAAAATAAAACGCTTGTAAAAGATGAAAATATAGACGAAAAATGTGACGTAGTCTTAGGAAGGGTTTTAGAAAATGATTCAAAAACTGAAAATAACgataaagatttttcaaatgttGTTGCAAAAACAAGCATGGAACATGTTACACATTCGAAAGAAGCCGTTTCGCAGTCAATTTCGATTAAATGTGATAAAGAGAAAATGAATACTGATACttctacaaatattaataaagaaacaaaaattacaaatacaacatTGAATGCAAATAAATCTGTTTGCCCAaagattaatatagataaaaataaagtagaaaCTAAAACAGAAATTCCAAAGCCCAAAGTTATGACTTCCaaaccaataaataataataataccgcGGTACCTTTTGGTAAATGGACTTCAGCAAACagacaagaatttttaaataaaataaaagaaatcaaaataCCCTCTAACAATTCTAATACGAAGCAAATTAAACAGCCTAATGATTTGAATAGAAGAGATGTTTTGAAGAAATTTGATAGCCAAAGGCAATCAGCCACAGTTTCAACAAAAACTGTCGAGTTTGGAACTACGTCTAAACTTACCGCAAAAGTTGAGACTACagcatttgtaaataaaacaaatactagCCAACACGCTAATAAACAGGATGTGAAAGTTACTTCAGTTAAAAGTCAGCCTTCATTTATAAAACAGAAACCCGTACCTAGtaagaaaatacaaaaagatgaatcaattgaCATTTCAACCAAAAAACCAATTCAgcgaaaagaaataaacaacCAGGACTTAATTGATAAAACTATTGAAGGTATTATCAACAGGGCAGTTACAACAAAGAACACAGAAAATACTGGAGAAAAACCAGTAAATATTACAGAGAAAAACACAAATTCCAATCCAGTTTCCTTAGACGATATTGAACAGAAGATGAACGAGTTACACGGAAATCCATATGATGAGCGACTATCACATGAAATACCCCAACATACTAGTAATGACATTAAGAACAGTTCTAAATCCGAGAACCTCAAAATTGACAAAAAGAGCAAACTACCGAATCTTgtaccatttaaaaataaagatcatCAAAATGTGAAAGAAAGAGAACCGGATGAAGTTTCAGATGAGGAAATAATAGAGCACGAGCCTATAACAGGCGATATTGAtgttaacaaacaaaatttagtaTCCTTGTTGTCCAATAAAGAGAAAGCACCTACTGAGTCCAGGAAAGAACCAATAATTACAGaaaaagattttgataaatttgctAGAAGAAATTCGATCACTTATGAGAATTGCTTAACTATGAGTCTTGATGGTAAAGAGCCACACAACGTTATTCAAACCATAGTTGAAAAAGAACCtcctgtaaaaaaattatcccGAAATGAATTGATGCTTGCCGAATCTAAAGCAAAATCTACCATTAAACAACATAATATTGCAATGAGACACAATAACCAGTCAAGTAAAATTCCAACATCCGTAAAATTAACAACTGAAGAAGACacatttactaaaaattatCAATCTAGAGTGCAAATAGCTTACCAATCTGTTTTAACAGCTAAACGTAATTTGGAGTGCCCGATTACAATAATTGAAGATAAGCCAGTAAAAGTGGTTTATATGGATAGTAATATGGAATTTACACCAGCGCAGTTAAATGTACAAGGGCAGGAATTATCACCGCCTAAAAAACAAACATCGGAATCGTCCGATGCAAATAGTGCATCTGAGTCTATAGATTCAGAAATTGTAGAGTCTCATAACGAAATTAAGCCGCAAGacgaaactaaaataaaaataaaacatcaacgaAAACAAGTTTTGACACCAGTTGAAGAACCTGAGCTAGAATTAATTGTACCGGATGATTTAGGTATTGAAGTTTCGCCCAAGAAAAAACGTAAATTAGAGGATAAGAATGATAAAATATCTAAGAACCTTGTGCCAAAGAAATCTTACCTGTTAAATCGTAATATAATAGAAGACGAGATTCCAAAACCGCAAAATTTAGCCAAGAGTACATCTAACGAGACTGAGAATCaaagtgaaaaatttaaaagtcataCTGATACTATTTCGGCGATAGATAACTTAGTGAAAGCCGCTGAATTAATCGAAACACAGGCAGAACAAAAGAACGCTATAACTAATGTTCAATCTCTAGATAATTCTCAAAACACTCCAATAAAGAGAGGAAGAGGTCGTCCAAGAAAGTATCCGATACCTGAACAAGGTTTAGATGTAAAAGTTCCAACTCCACAGAAAAAACCTCGTTTAATTGATGCTAAAGTTACCAAGAATTACTCGGATTCCGATGACAGTAGCGACGGAGAAATTGTTAAGGAAAATTGGACAATGggcaaaattaatgaaaatattgtctGTCCTATTTGCAACAAATTGTTTAGATCTGAAAATGTTGTATTTAAACACGTCAAACATTGTACAGGTCCGTCGCCCAATAGATCTGATTCGGATAAAAGAAGCCCGATACGACGGAGGCACTCATCCGAAAGAAAATCTTACGAAAGCAGATCAGACTTTACAGATGATGATGAAGAGGAAGAAAAAGTTAGAAGTCGTAAATCTCGTCACTATGCTAAATCTGCAAATGACAATGATGACGTTATACTCATAGAAGATACGCCACTCAAAGAAAGACTGGACAAAGCCCAAAAAGTAAAGCTTTCCcagttaaagaaaaatattgcaaaaagtAAACTTCAACACAATACTAATAATCTCATTTGCGAATTTTGTGGAAAAACATTTAGACAGCTATCATATTTGGTCAACCATAAGATGCAGCACAAGAAAGACGATATGAAAAACTCCGAAAGTGAAGTCACAAAATCTGTATTTAGTTGTGATGTTTGTAAGAAGGAGTTTAGAAAACCGCATCATTTAGTTCAACATCGAATTATGCATAATACTAACTCGACGGCTACAAGGGTACTGAGAAAAAGTTCATCAGAACAACATGATACTATtaaatctttgaaaattcaaaatgatGTAAAACAAAGCGATGACCCAAGTGCTGGTTTTCGTTGTGAACCATGTGATAAATCGTTCAGAAAGTTGCATCATCTTGTCGAACATAGAGAGACACATGATTGCGTGAATAAAAAAGGTACGTCAAATGCACAAAGCACCAATGAATCACCTAAGCCTTCGTTAGTTCATTGTTGtgatatatgcaaaaaagtatttaaaaaattacaagattATTTGGAACATAAAGAACAGCATTTAGAAACAAGCTCTGAGAAATCAGATGATAAAAGTGTTAAGAGCTCACTGTCGACGAAAGATATTATTCATGAGTGTTCTCTTTGTTACATGGTCTTCCCTAATGAGCATTCATTAAACAAACATACGGTCATTTGCCttagaaagaaaaaacaatCAGCTGCTAAGCAAGCTGCTAAGAAAACCGAGGAGGAAGAAGTAATCGACGCAGACGAATGTAAATCGGATGAAAATATTTTGCAGGATATAGAGCTAAATAAGCCCTATGAACAGATAGAGGACTGTCAAGTAATTCAAAGTTCCCAGAAGGATTTGGATAATATACCCTTACATCAAAAATCTGAATCACCAGATATTGAAAAATTAGAGATATGTCCTGCTAACGATAAGAATGATGAAttagaaaagaagaaaaataattctGAAACGAAAATCAACGTTGTAGAATTGATACCGGACAAAACAAGTAATGATCAACCTAAACAAAATGCGCCTAAAATAAAGGAAGAAATTGAACAGcctataaaaattaagaaaattgatattaaaGAGCAAATTATAATTGTAGATACACCTACACCTAAAAAgaaattaccaaataaagaaaaaattgctCCAACTGTAACAAAAAGGCACAAGCCAGTTAGTGCTCCTCCGCCAGTTGTTGAAGAACCAAAACTTAAAGCGGAGTCAAGTGATGATGATGAGATACGATACATGTTAAATCCAAATTTCAAAGAAGATGACGGCTTAGAGGGTAAATTGTTCATGAAAGTAAGAGCTAAGAAACGTAATTCCCTTCAAATAGAAAGACCTAACtcgaaagatttaattaaaagaagaatatCACTACAACACCCTCCGAAAATTCCTCGTTTGAAAGCAAAAGCAGTTGAACCGAGGCCTCTTAATTCTCTAACAGTTGAGAAAAAGTTAAAACTTTCTAAACCAGAAGTTGTACCCTACACGGATTCAGATGATAGTGACGTAAAATATTCTTTCCCGAAAACAATTTCGGACGAGGACGCACCTAAAGATGTtgacaaaaaaagaaaacaatcttTGGCAGCTAAGAGGAAATCCCTAAGTGGCATAGCGAAACGGAAATCAATGGGAAAGCACAAAATAGCGACACCGACGATTAAGACTAAAAAACgcACAACAGAAGTAGAACATAGATGCGATTGCGGGCAATTGTTCAGTAGCGCGGCGCTGCTGTCGCGGCACACCACGCTTGCGCACACGCCGCCGCGGATACGACGACGCCGCTCTCCCCCGCCCGAGTTCGAAATTCAAACGTCCAAGTCAAGGACCAACAAAACTAAACCGAGCGCACCGACCAAAAAGCTAAGAAGTGACGTTACCAATTCGAATACAACCGTAAATAAAGGCGTGGgaacaagaaaatctagtgttatCAGTGCTGAAACGAAAGTTACGAACAATACCAACAAAACGACGATCGAACACAGCGGTAAAAAGCTCAGGAGTTCAGCACATAGGGGAGTGCCTGTGCCGGAGAAAATGAGGAAACTTATGGAGAAAACGAAAAAGTAA
- Protein Sequence
- MDRLNQIRGEAGSSRDLTLDTTSPPSEAFMTANESSSKYFTLSEVDSTFSISPSKDSLTATSTDPDRTITTDTELISNLSPIPKKSDLDSYKIGKQIEAANILSGGVNIFDDNDNSYDGDELVIDDNVIVEDEKASAELKLNETTELPLDKTENLETLEDTETIPSKDTEVVLQIDGKNVDAIDIGNGLYLYRKAGEEELAAVQIIDDDQQQPSFKFLKVRENAEGNLEVYEEIEIEIPKEVPTKEGNPAGNTSSHVPIKDISKMINEPIGNKVVEKINKTPKNESNINNDLSSEPNVDLQTEIKTEVNLNGKMVKFNESRKSPLIGTYTPMTYHSTPNKEGIPLTKTMVDQQLHPSRHSDNIKKTIEVHTDSCRQKLWETPLKNKDVNEISKTSEVITDNQDTVESVVESVSPQEDINEKQSENEINLKVVDSIDVSESIEEERKVEENCISETKNIENLKTDEEHKAEELVEESPSKEEEIKDENRKKEEKVELINDSVEENINEIIISQDNEVKSCVDENSVPIAEEIQSKLEKETLSDLNINKETKDIKVNDDIIEIDNVNNDNVAIEHTEENHIDTKLDENPLSIDNAVDTNNENQKEDKLIETKNLSKDIKCVDSESANEVNKATEIMCVEETIISDEVKTDNIETEIKNVVESSTDNITGISKASSEPVLTNQNKKVEECKDNDVLQNAPSTGTLILNDNNDEDKNLKDNKDKTSDTHSETTNALQEKPVIVSAENEKSSLKDIKNVNTMIQAENKTLVKDENIDEKCDVVLGRVLENDSKTENNDKDFSNVVAKTSMEHVTHSKEAVSQSISIKCDKEKMNTDTSTNINKETKITNTTLNANKSVCPKINIDKNKVETKTEIPKPKVMTSKPINNNNTAVPFGKWTSANRQEFLNKIKEIKIPSNNSNTKQIKQPNDLNRRDVLKKFDSQRQSATVSTKTVEFGTTSKLTAKVETTAFVNKTNTSQHANKQDVKVTSVKSQPSFIKQKPVPSKKIQKDESIDISTKKPIQRKEINNQDLIDKTIEGIINRAVTTKNTENTGEKPVNITEKNTNSNPVSLDDIEQKMNELHGNPYDERLSHEIPQHTSNDIKNSSKSENLKIDKKSKLPNLVPFKNKDHQNVKEREPDEVSDEEIIEHEPITGDIDVNKQNLVSLLSNKEKAPTESRKEPIITEKDFDKFARRNSITYENCLTMSLDGKEPHNVIQTIVEKEPPVKKLSRNELMLAESKAKSTIKQHNIAMRHNNQSSKIPTSVKLTTEEDTFTKNYQSRVQIAYQSVLTAKRNLECPITIIEDKPVKVVYMDSNMEFTPAQLNVQGQELSPPKKQTSESSDANSASESIDSEIVESHNEIKPQDETKIKIKHQRKQVLTPVEEPELELIVPDDLGIEVSPKKKRKLEDKNDKISKNLVPKKSYLLNRNIIEDEIPKPQNLAKSTSNETENQSEKFKSHTDTISAIDNLVKAAELIETQAEQKNAITNVQSLDNSQNTPIKRGRGRPRKYPIPEQGLDVKVPTPQKKPRLIDAKVTKNYSDSDDSSDGEIVKENWTMGKINENIVCPICNKLFRSENVVFKHVKHCTGPSPNRSDSDKRSPIRRRHSSERKSYESRSDFTDDDEEEEKVRSRKSRHYAKSANDNDDVILIEDTPLKERLDKAQKVKLSQLKKNIAKSKLQHNTNNLICEFCGKTFRQLSYLVNHKMQHKKDDMKNSESEVTKSVFSCDVCKKEFRKPHHLVQHRIMHNTNSTATRVLRKSSSEQHDTIKSLKIQNDVKQSDDPSAGFRCEPCDKSFRKLHHLVEHRETHDCVNKKGTSNAQSTNESPKPSLVHCCDICKKVFKKLQDYLEHKEQHLETSSEKSDDKSVKSSLSTKDIIHECSLCYMVFPNEHSLNKHTVICLRKKKQSAAKQAAKKTEEEEVIDADECKSDENILQDIELNKPYEQIEDCQVIQSSQKDLDNIPLHQKSESPDIEKLEICPANDKNDELEKKKNNSETKINVVELIPDKTSNDQPKQNAPKIKEEIEQPIKIKKIDIKEQIIIVDTPTPKKKLPNKEKIAPTVTKRHKPVSAPPPVVEEPKLKAESSDDDEIRYMLNPNFKEDDGLEGKLFMKVRAKKRNSLQIERPNSKDLIKRRISLQHPPKIPRLKAKAVEPRPLNSLTVEKKLKLSKPEVVPYTDSDDSDVKYSFPKTISDEDAPKDVDKKRKQSLAAKRKSLSGIAKRKSMGKHKIATPTIKTKKRTTEVEHRCDCGQLFSSAALLSRHTTLAHTPPRIRRRRSPPPEFEIQTSKSRTNKTKPSAPTKKLRSDVTNSNTTVNKGVGTRKSSVISAETKVTNNTNKTTIEHSGKKLRSSAHRGVPVPEKMRKLMEKTKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -