Hmis001943.1
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- -
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000002.1:6017806-6027056[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.71 62 5.1 4.9 1 23 1890 1912 1890 1912 0.96 2 9 9.3 8.2e+02 1.6 0.1 1 23 1919 1941 1919 1941 0.93 3 9 0.005 0.44 11.9 1.3 1 23 1947 1969 1947 1969 0.96 4 9 0.0006 0.053 14.8 1.9 1 23 1975 1997 1975 1997 0.97 5 9 0.0015 0.13 13.5 2.1 1 23 2006 2028 2006 2028 0.98 6 9 0.0014 0.12 13.6 0.6 3 23 2076 2096 2075 2096 0.97 7 9 0.04 3.5 9.0 5.4 1 23 2113 2135 2113 2135 0.96 8 9 4.3e-06 0.00038 21.5 0.7 1 23 2141 2163 2141 2163 0.98 9 9 1.5e-06 0.00013 23.0 3.1 1 23 2169 2192 2169 2192 0.98
Sequence Information
- Coding Sequence
- ATGCCGGTCACACGCTCTACGAAACAGACGTCCGACGAAAGCGCCACCACCACGGAGGCGTCAGGTTCTGCAACCACGACGTCGTCGGACGCCACCGCCACCACGACCACCGAGACTACAGCCACCGAGACTACGGCCGCCGAGACTACGGCCGCCGAGACTACGGCCGCCGAAGCCACGAAGAACGCCGAACAAGCCACAGTGCTGCAACCCGCCGTAATGAATCCTCAAGAGCAGCAAGATAGACGATCCGAGAGATCGAAACGAATCAACAGAAAAGCCCGTCGCATCGCTCAGGCCAAAGAAGAGGTATTAAGAATCGAATTAGAGCTCGCGAAGGCGAGATTGGCCTGCATAGAAACAGAAGACGACAGCGATGACGATACGGTCATCTCCGACGTAGGAGCACAGCAACGAGTTGGTTCGTGGTTAAACGCCACACAGGAACACAGGGCGACTTTGCCCCAGACAAACGAAAATCAAGACGTACGGGCACCGGCTGAGCCGCCGTCGGTGCCGGTACCCCCGCCGCCGGCATCGGCGGCGCTCGTAGTAGCAAAAAGAATTGAAGAGCCGAAAAAGGAAGAAAACGAATACGAGAAGACGTCCCAAGTCGATGTGACAAAATTAGCGTCTGCCATCGCCGTGGCAGCCAGATCGGGACAAACAGTGAAACAGGTAACAGAGCTACCTTTATTTTTCGGTTCCCACACCGATTGGCTCTCCTTCAACGCGGCATATAGAGAATCGTCGTGTATGTAcagtgaaatagaaaatatgggAAGATTACGACGAAGTTTAAATGGAAGAGCAAAAGAAGCCGTAGAAAATCTACTCATACTCGACGGAACCACAGACGATATCATGAAGACGCTTGAGGCACGCTTCGGTCGACCAGATACGATCGCCTTGTCAGAACTAGAAAAACTTCGCGCCTTACCTCGCCTCAACGACTCGCCGAAAGACATATGCATCTTTTCAAGTCGAATGATGAACGCTGTCGCAGCCCTGCGCGCACTCGATCGCGTACACTACTTGCATAGTCCGGAAACAGCAAAATGCATCGTGGATAAGATGACGACAAGCATGAAATATAAATGGTACGAATACTCCTCGCTATGCTCAAGAGAAGACCCAGAACTTATCAAGATAATGAAATTCCTACAAAACGAAGCACGACTATGCGGTCCTTACGCAGCGCCAGAGACTTCGAGTGCCGCCACAGAATCGACCGGGCCACCGACAAGACGCTTACATAAAAGCTACGCCACTACAGAGAAAACATCATTCAAGTGTCCTTCCTGCTCACGTGATGGTCATATCCTACCACAGTGCACAAAATTCAGAGAAGCAGACGTCAACACACGATGGGACATAGTAAAATCGAACCGCTTATGTTTCGGCTGTCTACGATACCGAGGAAGACAACACAACTGTCAGCGCAGAAAGTGCGGCGAAGACAACTGCAAATACTGGCATCACAAATTACTTCATCATCATAGAACGATCGACAACCCGAAGACGAACacagaaaataatgaaacagtCGCGTCAACGTGGACAGAAAGAAAGTCGCAGtcatacttaaaaatagttCCGGTCAAAGTTTCCGGACCGGCGGGAGAAGTGAACACCTACGCACTGCTCGACGATGGCTCTACAGTCACCCTCGTCGAATCAAAAATCGCTCAACGAACAGGAGCAAAGGGGCCCGCCGAAACGCTACACATCGAAGCAATCGCAGACACAAAAATAACAGCTACGAAATCACACCGAGTCTCATTGAAAATACAAGGCACGAAAGAGTCACACGCCATGCACGCGCGCACAATAGAAAACATCCAGTTGTCACCGCAGACTGTCAACGAGGCCGACTTAGAAGACTGCAAACACCTCAACGACATCAGAAGGGAACTCGCGTACGGCAAGATAAAGCCACAAATATTAATCGGCCAGGACAACTGGCATTTATTGATCGCCACTGAAGTACGACAGGGACACCGCAATCAACCCGTCGCTTCTCTCACCGCACTCGGATGGGTGCTACACGGTGCGCACTCACGATCTCTGGGACAGAGAGTTCATTTCGTCAACCACATAGTAACACGAGAAGACAACATGGACGAAGAACTCAAACGATACTTCGCAATAGAATCACTCAACATAGAAGCTAAACGACCGAAGAACGATCCCGAGAAGCGCGCCCTCTTACAACTCGAACAACACGTGAAAGAGAGGGAAGACGGACGGTACGAAGCGCCCCTACTATGGAAAACAGATGACGTCGTGCTACCGAATAACTACGAAAATACATTGAAAAGACTCTACAGTGTCGAAAGAAAGATAGATAAAGACGTCGACTTAAAGAAAAGATACAATGAACAGATAGAACAACTATTAGAAAAAGGTTACGCCGAGCTAGCGCCGCCCCCAAAGAACACAAACCGAACGTGGTATTTACCTCACTTCGACGTCAAGAATCCAATGAAGCCAAATAAACTACGCATCGTTCACGACGCCGCAGCCAAGACGAAGGGCGTCTCACTCAACGACAACCTACTAACGGGGCCCGACTTACTACAGTCGCTACCCGGGGTTCTGATGCGCTTTCGACAACACCCTATAGCAGTCTCAGCTGACGTCAAAGAAATGTTCATGCAAGTCAAGATCATAGAAGAAGACAGGGACGCCGTGAGATTTCTGTGGAGAGGCGACAGACGCGACGACAAACCACCGGAAGAATATAGAATGACGTCGCTAATTTTCGGAGCCACCTGTTCGCCCTCAACAGCGATCTACGTCAAGGACATAAACGCGGCGAAACATCGACAACAATACCCCGAGGCGGCGTCAGCAATCATACACAATCACTACGTAGACGACTACCTACACAGCTTCGCAAACAAAGAAGAGGCCATCCGAGTATCAAAACAAGTGAGAGACATACAGACAAAAGCTCACTACGAATTAAGACAGTGGACGTCGAACGATCGCGAAGTCATAGAAGCCCTAGAAACAGATCCGGGTTCCAGAGAGAGCGTCGCACTACATCACCAAACTAGAATCGAACGAGTACTTGGACTCATATGGAGGCCAGCGAGCGACGAACTCAGCTTCAACCTCAACTTGAGCCGCCTACCGCAGAACGCCTTAGATAACGAACGACCAACGAAGAGAGAAACACTTCGATTATTAATGTCCGTATACGACCCGCTCGGACTAGCGTCGCCTGTCACCATCAGCGGCAAGCGAATCCTGCAAGAAGTGTGGCGCCGCGGCACCGGTTGGGACGAACACCTCGACGAAGAGCTCGCGAGACGATGGGTCGAGTGGGTAGCGCACTTGAAAAGCCTACGTGGTATATCCGTACCACGTTGCTACCCGGGTTACAGCCACAGCGACTCACTACAACTACACGTCTTCGTCGACGCGAGCGAATCGACATACGCCGCAGCCCTATACTGGAGAGTCGTCACCGGCGGGAGCGAAGTACACGTTTCACTCATCGCAGCGAAAGCAAAAGTAGCGCCACTCAAGTTGACGTCGATACCGCGCCTCGAGCTTCAAGCGGCCGTCATGGGCAGTCGCATGGCCGCGGCCGTCATAGAAGAACACAACGCGAAGCCCGAGTCGAAGACCTTCTGGACCGACAGCCGTACGGTACTCACGTGGATACGAACAGGCTCAAGATCATACCGTCCATCCGTCAGTTCAGTAAACGAGTGGCGATGGATACCTACGAAGATGAACGTCGCGGACGACGCGACACGCGAAGTACCCCGAGACCTGAACTGCGGACATCGATGGTTCCGAGGCCCTGAACATCTATATCAGGACCCCTCAGTATGGCCCACAgaacaacaaaagaaaatagtcAACACGGGCgaagaaaaaacaaacatattaagacACTCGAGTGACGTCACGAAGCTATCGGAAGCAATACCTACATATACACGATTTTCAAAATgggaaaaattattaagatcaaCGGCACGAGTACTACAATTCATACACCTATGTCAACCGAAGCgcgaaaaaatacattataaaagaaaCGCAAGAAATAAGGAAAGAGATAGCGACTACACACAAAAGAAAGAGACAAAAAATAGGTCGAGTTCAACGACCGAAGCATCAACAACTAAGAGGTCAACATACATCGATCTACCGACGCGCTATATTTTCGACGCCGAAAAGCTACTCGTACGCCTCGTACAAGAACAATCATTCAAAACTGAAATAGAAAATCTCAACAATGACAAGGAACCGTCAAAAAACAGCCGGCTTCGTACGACGTCAACAGAAATCAGAAAcggaatattagtattaaaaacaagAATAGGTGCAACGGCGGGCGTCACGGAGCAACAAAAACACCCTCCGATACTTGACGGAAATCACTACGTGACAAGATTGTACATAGACTATGTACATAGACAACTACATCACGCGGGCGTCGAAACAACAGTTAACGAGTGTAATCAGTACTACTGGATTGTGAGAGTGCGACCAGTGACAAGAGAAACGATACGACGGTGCCTAGCCTGCCGACGGAGGAAAGCCACACCCTCCGAGCCGCCGACGGGTAACCATCCACCCGGCCGGTTAGCTCACCACCAGCGTCCGTTCACCTACGTGGGCGTAGACTACTTCGGGCCTTTCACCGTGGTCGTCGGTCGAACTAACAAGAAAAGATACGTCGCACTCTTTACGTGTCTCACCACCAGAGCGGTACACCTCGAAGTCGCAGCCTCGCTTAGCACGGAGTCTGCTGTCATGGCGTTGAGAAGAATGATCGCCCGGCGAGGGTGTCCGACCGAGATATGGTCGGACAACGGGACCAACCTTCACGGCGCCGACAGAGAGCTTCGCAAAGCTATCGACACAGCCACAGAAGCGGAAGCCAACCAGAAAACCATCAGCTGGAGGTACATACCACCCGGAGCACCGTTCATGGGTGGCGCGTGGGAGCGACTCGTGCGAAGCGTCAAGACCGCCCTCAACACAGTACTACACGACCGACACGTGTCAGAAGAGGTACTGAACACTCTCCTAGCGGAAGCCGAATACACGGTCAACAGTCGACCCCTGACCCACGTATCAGTCGACCCCGAGGATCCCGAGGCCATCACACCGAACCACTTCCTACTACACGGCTCAGCGCGCGTCCCGGTACCCGGGACATTCAACGACAAAGACCTGGTCGGGAGGACACAGTGGCGAGCATCACAGCGACTCGCCGACATGTTCTGGGGCCGCTGGCTTCACGAATACCTACCCGGCCTACAGCATCGACGCGCGCCCCACGGGAAAGGGCCACCACTCAAGGAAGGCGATATAGTCCTGGTCGCAGACAACAACCTGCCGCGCAACACCTGGCCTCTAGGACGTATACAGAAGACGTATCCCGGGAGCGACGGAGTCGTCCGCGCAGTCGACGTGCAGACCAGAGGAGGAGTGCTACGAAGACCAACAAAGAAACTCATCCTGATGCCCACCGAGCCGCAGCCGCCTGCACCGAGAGACACTGCATCGCCCGAGGGACAATGCACGGCGGGAGGAATGTGCAGGACGACcgcaatATCGAAAATGAAAAAAGGTCTCGCGAAGTTCTCCAAGAAGCCGAAGAGTCTGGATAAGAAAAAGCTCTACCAGAAGAGGCCTCACGCTTGCGAATTCTGTCAGAAACGATTCTTACATCTAGAAACTTTACAGGTCCACAAGAAGTCCCACGAAGGCGAAGCCCTAGTGTACAAGTGCACGTTCTGCCTGACGGAGCAGCCGGACGAGGCGGCGCTGAAGGCGCACGAAGCGACGCACGATGGGGCGAAGCCCTACCTGTGCACGGTCTGCGGGAAGGGCTACAAGAAACGGGAGACCATGATCTACCACAGGAAGAGCCACAAGCCGGACAAGGAGTACATATGTGATATATGCACGAAGACCTTCAACGCTCAGTGCAAATTGCAGAGGCATATAGTCAGCCACCGCGTTGACAAGTTCGTCCTGAGGTACGAGTGCCCGGTGTGCGCGCACATGTTCAACACGAAGTATCACGTGCAGATGCACCTCGCGACGCACCAGAAGGAGGGACTAATTCAAGAAGAAAATCGAAACGAGATATTAGCGATGGTGTTACAGAATGCTAGAAAGATACCAAAAACACCAGACGCTCCCGCGGCGCTGACGGACATAGTCCCGTCCGACGAGCGGAGCCGGATATGCAACATATGCGGCGAAATATTCCAGCATTTCTACTATTTAGAGGAACACCTGAAGAGTCACGGTTCGAAAATAGCGATAGAAGACAACGAACAGACGAAGGAGAAGAAGCATGTGTGCAACATATGTAATAAAGGCTTCAAATTGCATTACTATTTAAAACTGCACAGCTTCACCCACACGAAGGAGAAGCCGTTCATATGCCAGCAGTGTGGCAAAGGCTTTATAACGAAGGGTAAATTAAAAAGACACTTGGAAACTCACACGGGGCTGAAAAAGTATCAGTGtcatatatgttataagttctTCACGAGGCCCAGCTATCTCAGAATTCATGTCAGGACCATACACGGTACTCAGGATTATAATTTTCGTTTGGAAAAACAGTATGGACTCTCGTCTGTGCCGGTTATGGGGCAGAACGTTTGA
- Protein Sequence
- MPVTRSTKQTSDESATTTEASGSATTTSSDATATTTTETTATETTAAETTAAETTAAEATKNAEQATVLQPAVMNPQEQQDRRSERSKRINRKARRIAQAKEEVLRIELELAKARLACIETEDDSDDDTVISDVGAQQRVGSWLNATQEHRATLPQTNENQDVRAPAEPPSVPVPPPPASAALVVAKRIEEPKKEENEYEKTSQVDVTKLASAIAVAARSGQTVKQVTELPLFFGSHTDWLSFNAAYRESSCMYSEIENMGRLRRSLNGRAKEAVENLLILDGTTDDIMKTLEARFGRPDTIALSELEKLRALPRLNDSPKDICIFSSRMMNAVAALRALDRVHYLHSPETAKCIVDKMTTSMKYKWYEYSSLCSREDPELIKIMKFLQNEARLCGPYAAPETSSAATESTGPPTRRLHKSYATTEKTSFKCPSCSRDGHILPQCTKFREADVNTRWDIVKSNRLCFGCLRYRGRQHNCQRRKCGEDNCKYWHHKLLHHHRTIDNPKTNTENNETVASTWTERKSQSYLKIVPVKVSGPAGEVNTYALLDDGSTVTLVESKIAQRTGAKGPAETLHIEAIADTKITATKSHRVSLKIQGTKESHAMHARTIENIQLSPQTVNEADLEDCKHLNDIRRELAYGKIKPQILIGQDNWHLLIATEVRQGHRNQPVASLTALGWVLHGAHSRSLGQRVHFVNHIVTREDNMDEELKRYFAIESLNIEAKRPKNDPEKRALLQLEQHVKEREDGRYEAPLLWKTDDVVLPNNYENTLKRLYSVERKIDKDVDLKKRYNEQIEQLLEKGYAELAPPPKNTNRTWYLPHFDVKNPMKPNKLRIVHDAAAKTKGVSLNDNLLTGPDLLQSLPGVLMRFRQHPIAVSADVKEMFMQVKIIEEDRDAVRFLWRGDRRDDKPPEEYRMTSLIFGATCSPSTAIYVKDINAAKHRQQYPEAASAIIHNHYVDDYLHSFANKEEAIRVSKQVRDIQTKAHYELRQWTSNDREVIEALETDPGSRESVALHHQTRIERVLGLIWRPASDELSFNLNLSRLPQNALDNERPTKRETLRLLMSVYDPLGLASPVTISGKRILQEVWRRGTGWDEHLDEELARRWVEWVAHLKSLRGISVPRCYPGYSHSDSLQLHVFVDASESTYAAALYWRVVTGGSEVHVSLIAAKAKVAPLKLTSIPRLELQAAVMGSRMAAAVIEEHNAKPESKTFWTDSRTVLTWIRTGSRSYRPSVSSVNEWRWIPTKMNVADDATREVPRDLNCGHRWFRGPEHLYQDPSVWPTEQQKKIVNTGEEKTNILRHSSDVTKLSEAIPTYTRFSKWEKLLRSTARVLQFIHLCQPKREKIHYKRNARNKERDSDYTQKKETKNRSSSTTEASTTKRSTYIDLPTRYIFDAEKLLVRLVQEQSFKTEIENLNNDKEPSKNSRLRTTSTEIRNGILVLKTRIGATAGVTEQQKHPPILDGNHYVTRLYIDYVHRQLHHAGVETTVNECNQYYWIVRVRPVTRETIRRCLACRRRKATPSEPPTGNHPPGRLAHHQRPFTYVGVDYFGPFTVVVGRTNKKRYVALFTCLTTRAVHLEVAASLSTESAVMALRRMIARRGCPTEIWSDNGTNLHGADRELRKAIDTATEAEANQKTISWRYIPPGAPFMGGAWERLVRSVKTALNTVLHDRHVSEEVLNTLLAEAEYTVNSRPLTHVSVDPEDPEAITPNHFLLHGSARVPVPGTFNDKDLVGRTQWRASQRLADMFWGRWLHEYLPGLQHRRAPHGKGPPLKEGDIVLVADNNLPRNTWPLGRIQKTYPGSDGVVRAVDVQTRGGVLRRPTKKLILMPTEPQPPAPRDTASPEGQCTAGGMCRTTAISKMKKGLAKFSKKPKSLDKKKLYQKRPHACEFCQKRFLHLETLQVHKKSHEGEALVYKCTFCLTEQPDEAALKAHEATHDGAKPYLCTVCGKGYKKRETMIYHRKSHKPDKEYICDICTKTFNAQCKLQRHIVSHRVDKFVLRYECPVCAHMFNTKYHVQMHLATHQKEGLIQEENRNEILAMVLQNARKIPKTPDAPAALTDIVPSDERSRICNICGEIFQHFYYLEEHLKSHGSKIAIEDNEQTKEKKHVCNICNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITKGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRLEKQYGLSSVPVMGQNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -