Basic Information

Insect: Hypolimnas misippus
Gene Symbol: -
Assembly: GCA_008963455.1
Location: JBBEEQ010000019.1:1840602-1843488[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0016 0.14 13.4 0.9 1 23 299 322 299 322 0.92

2 12 0.024 2.1 9.7 2.2 1 19 340 358 340 362 0.92

3 12 2.6e-05 0.0023 19.1 3.7 2 23 368 389 367 389 0.97

4 12 0.02 1.8 10.0 5.4 1 23 393 416 393 416 0.96

5 12 0.74 65 5.0 1.5 1 20 419 438 419 441 0.93

6 12 0.00049 0.043 15.1 0.3 2 23 523 544 522 544 0.95

7 12 0.25 22 6.5 0.2 2 23 564 586 563 586 0.96

8 12 1e-06 8.9e-05 23.5 4.1 1 23 592 614 592 614 0.98

9 12 0.00055 0.049 14.9 2.5 1 23 619 641 619 641 0.98

10 12 0.0029 0.25 12.6 2.4 2 21 648 667 647 670 0.93

11 12 2.8 2.5e+02 3.2 2.4 1 19 677 695 677 696 0.87

12 12 0.032 2.9 9.3 2.3 3 19 709 725 708 730 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0016	0.14	13.4	0.9	1	23	299	322	299	322	0.92
2	12	0.024	2.1	9.7	2.2	1	19	340	358	340	362	0.92
3	12	2.6e-05	0.0023	19.1	3.7	2	23	368	389	367	389	0.97
4	12	0.02	1.8	10.0	5.4	1	23	393	416	393	416	0.96
5	12	0.74	65	5.0	1.5	1	20	419	438	419	441	0.93
6	12	0.00049	0.043	15.1	0.3	2	23	523	544	522	544	0.95
7	12	0.25	22	6.5	0.2	2	23	564	586	563	586	0.96
8	12	1e-06	8.9e-05	23.5	4.1	1	23	592	614	592	614	0.98
9	12	0.00055	0.049	14.9	2.5	1	23	619	641	619	641	0.98
10	12	0.0029	0.25	12.6	2.4	2	21	648	667	647	670	0.93
11	12	2.8	2.5e+02	3.2	2.4	1	19	677	695	677	696	0.87
12	12	0.032	2.9	9.3	2.3	3	19	709	725	708	730	0.92

Sequence Information

Coding Sequence: ATGGAGGAAGAAATCTACATAACGGACTCGGATGGTCTATACCCAGTGTTACTTATACCTAAAAAGTGCACAACATTGGAGACGAACTGCGAAGCCACTGACAATGTATTCATAGATGTAAATATAACTTCACCGGACACGGAGGGCAATGAAATGTGCATATACTCTGGTTTCTGCAATGTTAAACTTATAGACAACTACGATGTGAACATACACGAGGCTGACTCCCAGAGTCAGTCCCCCGATGTCAATGACAACAATACAGCGGCTGTCGTAGTAACTGAAGGCAACCAAGGTTACCCTCCGTACAGTCAGTCCCAAGTGTGGATAGACCCGGCCAGGAGCccgtatgtatataatagttATGACACAGTGGAATCTCAAGAACATTACTCAGTCTACCACCAATCTCACTCCAGCCATATAACAGTCGAACAGCACAACACATACATAACACAGAATGTTTACAATTACAAAGAGTCCATTCAGTATTCTTCAGGTGAGGAATTTGAGCACAAAAAGTTTAGGAAAGTGCAAACAAATGAACCCAGTCAATCAGCATCGATGGaacaaaatctttatgaaaatgatGAATTTGAATGTGGTGTGTTCCTATCTCAGCTACCTGGTGAGATTATGCAGGAGAAAGAAAATAAGGCCAGAGAGGAACTGAAATACATTGACATACAAAGTGAGAATGATGCCTTAAAACAGCTCATGTCGTCTGACATTCAGTCGTTGTCCAAACAGCAGAAAACAATACTCTACTTGGGTCATGACTCACATTATGGTCAGACAATACAGAAAATTGCAATTAATGATCCATCCTTAGAATGTGTTGATAGTGGAAAAGATAATGATGTTATTGTCGAGGGTCAGACAAATCAAAAGAAATACCAATGCGACAAATGCaaacaaatatttgaacaaaTAACATCATTTAAACAACACATGGTCGGTAGTCATAAAAGTCCTAAGATTCCTATTTTGGGCACAGACACAGTAAGCGAAGTCAAATTCATGTGTACAGATTGTgggaaaatacttaaaaatcagAAGAAATTTGAACTGCATTGTCTAGGTCACGGTGATCCCGAACTAGAATGTAACAAGTGCCACAAAGTATTTGCATCAAAATTCACCTTAAGGAATCATCGTAAGATACACCAGCGAAAACACCAATGCACTTGCTGTACAAAAACATACTCTAACTTTGAAGAGTTAAAGACTCATATggcaaaaatacattttgtttttatttgtgacCTATGTGAATACACAGCGTCTAAATATTCAGAATTAGAACTTCATAAACTATGCCATAAGGAAATAGAAGTGAAAGAAACAAGTGACACTGAATTCACTCTTTCTCTAGATGATGATCTGGTAAGTGAGAGTGATACTCTAACCCCACCCCCCGAAGAGTGCATTTTTAATCCTGATAATGATGAATCATGTAAAATAGATCAAATTAAAAAGGCAGACTCGGTGATAGCGAAGGTCATGTCTAATAAGATATTCTTGCTGCATTCGAAGAAAGCACGACGACACAAGAGATATAAAAAGtcATGTGACGTTTGTCTAAAATCATTCGACCGCGTCGGTGATTTAAAACGACACCTTATAGAGCATGTAATAAGAAGCACGCTGGCCAAGACACCCGTCAACAAGAACGGCACACTGACCATACAATGCGAAGTCTGCCAAGCTGAATCCTTCACTAAAGTTGACAGATACAAGGCACACTTACGAGAACACGCTAAACTCACCTTATACAAGTGCACATTTTGCGACAAGTCCTTCAGCGACTCCAGCAACTTCTCCAAACACAAGAAGATCCACGGCACTACGTTCTTCCAATGCGATCTCTGTCAACGTAAATTCAACTCCAAGAAGATGATAACACAGCACATGGAGTATCACAATAACAACTCGCCGATACCATGTTTTTACTGTGACAAAGCGTTTCATTTCCCCTCGATGTTGAATAAACACGTGAAATGTGCACACACGCGCGAAATGTCCCGTTTTCGATGTAGATTCTGTCACGAATATTTCAAAACGTTGAAGGAAAAGTGGGATCATGAATGGAGAGTACACAACGTTAGAAAGATGATTGTCGATTGTCTTATCTGCGGTTCGAAATTTAGAAAGTACTCGGAATTGAAGCGACATTGTAATGATGTCCACGATATGGAAATTCCGCCCGCGAAAAAGTTGTTAAAGAAAAGAAGATCGCTTTAA
Protein Sequence: MEEEIYITDSDGLYPVLLIPKKCTTLETNCEATDNVFIDVNITSPDTEGNEMCIYSGFCNVKLIDNYDVNIHEADSQSQSPDVNDNNTAAVVVTEGNQGYPPYSQSQVWIDPARSPYVYNSYDTVESQEHYSVYHQSHSSHITVEQHNTYITQNVYNYKESIQYSSGEEFEHKKFRKVQTNEPSQSASMEQNLYENDEFECGVFLSQLPGEIMQEKENKAREELKYIDIQSENDALKQLMSSDIQSLSKQQKTILYLGHDSHYGQTIQKIAINDPSLECVDSGKDNDVIVEGQTNQKKYQCDKCKQIFEQITSFKQHMVGSHKSPKIPILGTDTVSEVKFMCTDCGKILKNQKKFELHCLGHGDPELECNKCHKVFASKFTLRNHRKIHQRKHQCTCCTKTYSNFEELKTHMAKIHFVFICDLCEYTASKYSELELHKLCHKEIEVKETSDTEFTLSLDDDLVSESDTLTPPPEECIFNPDNDESCKIDQIKKADSVIAKVMSNKIFLLHSKKARRHKRYKKSCDVCLKSFDRVGDLKRHLIEHVIRSTLAKTPVNKNGTLTIQCEVCQAESFTKVDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTFFQCDLCQRKFNSKKMITQHMEYHNNNSPIPCFYCDKAFHFPSMLNKHVKCAHTREMSRFRCRFCHEYFKTLKEKWDHEWRVHNVRKMIVDCLICGSKFRKYSELKRHCNDVHDMEIPPAKKLLKKRRSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01506664;
90% Identity: iTF_01078549;
80% Identity: -