Hmis001622.1
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- -
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000002.1:3401133-3403326[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.37 33 6.0 3.3 1 23 10 32 10 32 0.98 2 15 3.3 2.9e+02 3.0 0.1 2 23 58 80 57 80 0.92 3 15 0.0064 0.56 11.5 5.4 3 23 104 125 102 125 0.96 4 15 4.8e-05 0.0043 18.2 1.1 3 23 133 154 132 154 0.97 5 15 0.0021 0.19 13.1 0.3 3 23 161 182 159 182 0.95 6 15 8.3 7.4e+02 1.7 3.4 1 23 186 209 186 209 0.94 7 15 1.3e-05 0.0011 20.0 0.9 2 23 216 238 215 238 0.96 8 15 5.7e-05 0.0051 18.0 0.7 3 23 246 266 245 266 0.96 9 15 0.00015 0.013 16.6 1.4 1 23 322 344 322 344 0.98 10 15 0.012 1.1 10.7 0.9 2 23 413 435 413 435 0.95 11 15 1 91 4.6 2.6 1 23 469 491 469 491 0.92 12 15 1.4 1.3e+02 4.1 2.5 1 23 495 518 495 518 0.93 13 15 0.00087 0.077 14.3 2.6 2 23 525 547 524 547 0.96 14 15 0.00056 0.05 14.8 0.2 2 23 554 575 553 575 0.97 15 15 9.8e-05 0.0086 17.2 1.4 2 23 582 604 581 604 0.96
Sequence Information
- Coding Sequence
- ATGCCATTTAGGTGGCTAAGGAGTTCATACAGATGCTTCTACTGTTACGACGTGTTTAGAGAACCGAAGGACTTAAAATGTCATCAAAATGTGCATTCAGTTGAAGATGAAATACTTAAGGCAATGGAGAATTATTGGGAACCAGAAGTCTATGTGGATATTTCTAATCTCTCGTGCAAACTTTGTCCTGATACAATAACCGAATTGTACCAGCTTGTCGATCATTTAATAGTTAAACACAAAATAACATTCAACAAGGATGTAGGGATCGGAATGAACGCTTTCAAATTGGACGAGTTCTCCGTGAACTGTTCAATTTGTCATCATAGATTTAGTACGTTTGGGCATTTATTGGTACACACGAATAAGGATCATAAAGGATGGTCAGAAGTGCTTTGCGATATATGCGGCCAGCATTTCCGAAGTGCGAAGTATTTGAGACAACATGTTAGGAACGCACATATGGAGAAACCTGTCATTTGTACTCTCTGTGGCTTAACAGTTATTAGTAGAAATAAATTGAGGACACACATGCAGAATTCACACAATCATAGATACAAATGTTACGCGTGTTCTGATCAATTTACGACGCATTATAAAAGATCCCAACATATGATGCTTGCTCATAAGAGTAGAGAGGTGGTGAAATGTTCATATTGTCCTCGATCGTTTGTGTATAGGAGTTCTATGACGAGGCATGTAAGAGAAACGCATTTGCAAGAACGTACAGCTATTTGTAGCGTCTGTGGCTGGCGGTCCTTCTCCAAATATGATCTACAAAAACATATGATGAAACACAGAAGAGTCGATAAGAAAGAGCCAGTGAGCAAGAAAAAACCGAGATTGAAGAGAACCATTATAACGAACAAACCAGATACGATCGCGTTAGATTTTATGAGAAAAAACACGATACAAATCTTGGAAAAATCGACTATAGTACCCTTCAGATGGTTAAGGAGTTGCTTCAGATGCTTCTACTGCTACGAAATGTTCGAGCAGCCGGAAACCCTAAAATCCCACCAGCAAGAACATACGGTCCAAGATATACACGAAAGTGTGAAGAATTACTGCGAATCCTTTCTCATTGTTGATATTTCAGATATATCGTGTAAAATATGCTTCGTGAAAATAGatgatatttttcaattagTGGATCACTTAACTGCGTATCATGAGGTCGAATTTAACAACGAAGTTGGTATTAGCATGGCTCCAGTGAAACTGGACGAAGGTGCCAAATGCGTTTTCTGCGCAATGGTTTTCAAAAGTTACAACCATTTAATCATACACATGGGCAGATACCACAAGGGCTGTTTCAAATCAATTTGTACTTGCTGTCGTAAACACTTCAAGAGTACGCAAGATTTTTGCGGGCACGTccagaaagaattttttgagaataattttaaatgctcACATTGTGACGTGACTTTGCATTATGGCATATTACGGAGCCATATGCGAGATGTACACGGCATGAAGTACAAATGTCTGAGTTGCTATGAGTTTTTTCCATCACACTACAAGCGATCGAATCACATGGCTGATATACATGACCGTAGGAAGAAGATTAAATGTTCACATTGCTCGCGGAGCTTCATCTTCCGCAGTATTTTGACGAGGCATATTCGTGAAAACCATTTGAAGGAGAAGAATGTTGTGTGCGAGATTTGTGGGTGGAGGACGTATGGGAAACATGAATTAGCTAACCATATGGCTAAGCATGATACCACGAAGCGTGTACGGTGTCCGTCGTGCGATAAGGCGTTCAAAACCACCAAATATATGAAGAAACACTATATGAAAGCTCACGAATAA
- Protein Sequence
- MPFRWLRSSYRCFYCYDVFREPKDLKCHQNVHSVEDEILKAMENYWEPEVYVDISNLSCKLCPDTITELYQLVDHLIVKHKITFNKDVGIGMNAFKLDEFSVNCSICHHRFSTFGHLLVHTNKDHKGWSEVLCDICGQHFRSAKYLRQHVRNAHMEKPVICTLCGLTVISRNKLRTHMQNSHNHRYKCYACSDQFTTHYKRSQHMMLAHKSREVVKCSYCPRSFVYRSSMTRHVRETHLQERTAICSVCGWRSFSKYDLQKHMMKHRRVDKKEPVSKKKPRLKRTIITNKPDTIALDFMRKNTIQILEKSTIVPFRWLRSCFRCFYCYEMFEQPETLKSHQQEHTVQDIHESVKNYCESFLIVDISDISCKICFVKIDDIFQLVDHLTAYHEVEFNNEVGISMAPVKLDEGAKCVFCAMVFKSYNHLIIHMGRYHKGCFKSICTCCRKHFKSTQDFCGHVQKEFFENNFKCSHCDVTLHYGILRSHMRDVHGMKYKCLSCYEFFPSHYKRSNHMADIHDRRKKIKCSHCSRSFIFRSILTRHIRENHLKEKNVVCEICGWRTYGKHELANHMAKHDTTKRVRCPSCDKAFKTTKYMKKHYMKAHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -