Basic Information

Insect: Hypolimnas misippus
Gene Symbol: -
Assembly: GCA_008963455.1
Location: JBBEEQ010000002.1:3357518-3361724[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.024 2.2 9.7 0.1 2 23 222 244 221 244 0.92

2 10 0.00013 0.011 16.9 0.2 2 23 270 292 269 292 0.95

3 10 0.029 2.6 9.5 1.6 2 23 316 337 315 337 0.95

4 10 2e-05 0.0017 19.4 1.3 1 23 341 363 341 363 0.98

5 10 0.26 23 6.4 4.1 1 14 368 381 368 391 0.86

6 10 0.0004 0.035 15.3 3.5 3 23 401 422 399 422 0.95

7 10 4e-07 3.5e-05 24.8 1.4 1 23 429 452 429 452 0.98

8 10 0.00065 0.057 14.7 0.7 1 23 458 480 458 480 0.96

9 10 1.1e-06 9.3e-05 23.4 3.3 1 23 486 508 486 508 0.99

10 10 4.2e-05 0.0037 18.4 1.9 1 23 514 537 514 537 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.024	2.2	9.7	0.1	2	23	222	244	221	244	0.92
2	10	0.00013	0.011	16.9	0.2	2	23	270	292	269	292	0.95
3	10	0.029	2.6	9.5	1.6	2	23	316	337	315	337	0.95
4	10	2e-05	0.0017	19.4	1.3	1	23	341	363	341	363	0.98
5	10	0.26	23	6.4	4.1	1	14	368	381	368	391	0.86
6	10	0.0004	0.035	15.3	3.5	3	23	401	422	399	422	0.95
7	10	4e-07	3.5e-05	24.8	1.4	1	23	429	452	429	452	0.98
8	10	0.00065	0.057	14.7	0.7	1	23	458	480	458	480	0.96
9	10	1.1e-06	9.3e-05	23.4	3.3	1	23	486	508	486	508	0.99
10	10	4.2e-05	0.0037	18.4	1.9	1	23	514	537	514	537	0.97

Sequence Information

Coding Sequence: atgaatttgaacacaacgTGTCGTTGCTGCTTAGCACGGCCGCCTGATAAGGATTTAAAGTCCGTGTATACATGTCTCGGCAAAACAGAAGTTTATAGTGATATGCTGAAAGAATGCTTCGAAATTCATCTATCATTAGAACCTTGTGATTCTGATAATGGAATATGTGAGGTGTGCATTGCTCGTCTCCGAGATGCTTGTGACTTTAAGTACCAAGTGCTGCGTTGTCAGAAGGAGTTCCAGATTAAACTTGCTATGTCTAATGATGTGaaagatGAAGATATgcctaaaataaaagaagaattttcGGATACTGaagataatgaaatatatttcttagATAATTATGAAGAACTTAAAGAAGACGAGAAGCTATCGGAAATACTCGGTCTAGAAGATGTTTCCGTGAAAAGGAAAGTTGAGAAGAAGAAGAATGGTAAAAAACGACAGATTCTTATAGAGAAAACCACTAAAGATCGCAAATCGAAGACCTTAAAACCGTCAATCAAGCTCTCACTCCGAACGTTATCACAAATAGAGAGACTCAACAAGTCGCCCGCAATCCGCTTCGTCAGCGAGAACAAGAAACACAGCATCAATAtggaaaaaattttgaaatactcAAACTGTACACCGTTCTTCAGTAAAACATTGGCTGGCATCGTTTGCGCCTATTGCAAAGAAGTCTATCAAACTCTAAACGAATTGAGACTCCACACGCAAGATATACACAAACAAGATGACATAACTTACACAAAACGCTTGGACAAAAGCAATTTATCACTTAAAATGGACATAACGGACCTCAAATGTAATATTTGTGACAAAAACTTTGACGTGATCGCGAATTTGAAGATACATCTTACCAAGGAACatgatattaaattctttcCCGACATAAACGATTATATACTAGAGTTTAAGTTAACGGATGATGAGTTATTGAACTGTGCGTTATGTCATTCAACGTTTGAAACGTTCAAGATGTTACTCCAGCATATGAATGGTCATTACCGTAATTATATATGTGAAGTGTGTGATATGGGTTTCATTAACAAGCACAGATTGAAAAATCATCAGCGTATTCATGAAATCGGTACGTTCAAGTGTGAATTCTGCGATAAGATCTTCACCACACGTGTGAAGAAAATGTGTCATGAGAAGTATACACATAACAGTGCTTCGAGGTACACAACAAACTGCCCGCACTGTGACCAATCGTTTAACAGCTATTATCAAAGGAACAGACACATGTTCAAAGAGCACAATGTTGCCGCAGCAACATATAAATGCAATATATGTGACAAATCCTTCATACTTAAATCAAAGTTGACGTCTCATATCAAAAAGGTGCATCTAATGGAACGTAATCATATTTGTACGGAGTGTGGGCAAGGTTTCTTCATCAAGCAGTCGTTGGAGGAGCATATGATAAAACATAATGGGGAGAGAGTGTTCAAGTGCACAGTGTGCCACAAAGCGTACGCTAGAAAGAAAACTCTCCGGGAACatatgagaattcataataacGATAGGCGATTTAAATGTGGTGTATGTAATTTAGCGTTTGTGCAAAAGTGTAGTTTAAAAAGTCACATGTTGTCAAACCATGGGATAAGTTTGAGTGAATTTGAAAATGCGAGGGGTGATATACTTAGTACGTGA
Protein Sequence: MNLNTTCRCCLARPPDKDLKSVYTCLGKTEVYSDMLKECFEIHLSLEPCDSDNGICEVCIARLRDACDFKYQVLRCQKEFQIKLAMSNDVKDEDMPKIKEEFSDTEDNEIYFLDNYEELKEDEKLSEILGLEDVSVKRKVEKKKNGKKRQILIEKTTKDRKSKTLKPSIKLSLRTLSQIERLNKSPAIRFVSENKKHSINMEKILKYSNCTPFFSKTLAGIVCAYCKEVYQTLNELRLHTQDIHKQDDITYTKRLDKSNLSLKMDITDLKCNICDKNFDVIANLKIHLTKEHDIKFFPDINDYILEFKLTDDELLNCALCHSTFETFKMLLQHMNGHYRNYICEVCDMGFINKHRLKNHQRIHEIGTFKCEFCDKIFTTRVKKMCHEKYTHNSASRYTTNCPHCDQSFNSYYQRNRHMFKEHNVAAATYKCNICDKSFILKSKLTSHIKKVHLMERNHICTECGQGFFIKQSLEEHMIKHNGERVFKCTVCHKAYARKKTLREHMRIHNNDRRFKCGVCNLAFVQKCSLKSHMLSNHGISLSEFENARGDILST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00796752; iTF_00986550; iTF_00985409; iTF_00843769; iTF_00695934; iTF_01078464; iTF_01506594; iTF_01079301; iTF_01080967; iTF_01508297; iTF_01507474; iTF_01080149;
90% Identity: -
80% Identity: -