Hmis017209.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypolimnas misippus
Gene Symbol
-
Assembly
GCA_008963455.1
Location
JBBEEQ010000020.1:3717488-3732355[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00066 0.058 14.6 0.7 1 23 214 236 214 236 0.99
2 10 0.00071 0.062 14.5 1.8 1 23 243 265 243 265 0.99
3 10 0.00087 0.077 14.3 1.7 1 23 299 321 299 321 0.98
4 10 2e-06 0.00018 22.5 1.5 2 23 328 349 327 349 0.97
5 10 0.0003 0.027 15.7 0.9 1 23 355 378 355 378 0.97
6 10 0.00022 0.019 16.2 0.2 1 21 383 403 383 408 0.93
7 10 2.4e-06 0.00021 22.3 1.5 1 23 416 439 416 439 0.93
8 10 0.00046 0.04 15.1 1.4 2 23 446 468 446 468 0.97
9 10 2.5e-07 2.2e-05 25.4 0.6 2 23 476 497 475 497 0.97
10 10 0.95 84 4.7 0.0 6 19 507 520 506 525 0.95

Sequence Information

Coding Sequence
atggaAATATGTCAAGCTTGTTTAAAAACAGGCGATTGTGTACATCCTATGACTGCAgacgatttaaaatattatagcttGTTTGTGACGAAggtAAAAGATccattaattattatgtacatttgTATATACTGTAAGAGTTTTCTGCGAAGAATCGTCAAATTTATCGAACAGTTACAAACATCGGATGTTATAATAAAGGATGCTGTGAAAatgCCCGAAGAATTCTCaaagttaagaaataataatttagttatatcGAAAACTATATACAATTATCTAGGACCAATGGAGTTAGATGTAAAAGTCGAGGATGTCTTCAAAACCCAtgtaactgatgatgaagacaaTATACctttggtatttttaaatagtaacgGAGACGCTGATTCTAATGATTATTATGATGAAGACTTGgagaAAAACGTGAAAATAGATATCAAGAAGGAGGGTTTCGAAGACAACGCACAGACAGACATATCGAATAGCAAAAAAAAGTGCAAGAAAAAAGTTAAAGAAGGTTTTACATCGAGAATGGTCACGGAGACAACtgaatatattgttattaaactgACTAAGGAAGAGATCCTTGAAGAGATGCAGCAAAAGTCGAATAGCgagaaatataaattgttaccGTACAAATGTGAGAAATGCGTCCGAGGATTTAACTTTGAAGATGTTCTACAGACTCATATGGAAAAACATTCACCGaaCAATGGCCCATTTCAGTGTGAACTCTGTGAGCAGTTTTGTCCTAGTAAAGTGTCGTTGCGAGGTCATATGAAGTCACATTCAACTAGatataaatgtaaattgtgCAGTCTAGTAAGATTATCGCGTCAACATATACTAGAGCATTACTCGTTAGAGCACACGGCGTCGGCTGCGTTATACAGATGTCCAGAATGCCCGCACACCACTAATAAACGCACAGCAATGCAACGTCATGTAAAACTGCATTCTAGCAATAAGCCACTGAAATGTAAACTATGTGGTAAATTCTATAAGAGCAAGGAGTCGCTACGAGTACACATTATGCGTCACGATGACAAAAAGTTGCATCAATGCGACCTATGTACGAGTTCGTTCGTCTACGCGATCCAACTGACGAAGCATATGCTATCCGTTCACGAAAGAAAAGACTATTACTGTGTCGAATGCGATATAATGTTCAAATCTATGGGCAATTTGAAACAACATTTAGAACGAGCTAAAGTGCACCGAGATTCTTCGTCGTACAAATACCAATGCCCACACTGCGATAAGCGTTTCATATCGCAATCGACACTCGCAACACACAATAGCGTCTCGCACGGCGCAGCGAAGACTGCGCGATGTTCGCAGTGTACGCGATCGTTCACTAGTGTAGACGCTTTGCGCGGTCACACGCGGCGTTCGCACGCGCAAACGCGATCCGTTCTGCCTTGCACGATGTGCGATAGAGTGTTCTCGCGTAAATATGTCTTACGTGTGCACATGCGCACGCACACTGGCGAGCGTCCGCACACTTGCGCGTGTGGTGCTGCTTTCGCTCAGCCCGCGGCTCTGCGCGCACACTGCGCTGCGAAACACAAGaaATGA
Protein Sequence
MEICQACLKTGDCVHPMTADDLKYYSLFVTKVKDPLIIMYICIYCKSFLRRIVKFIEQLQTSDVIIKDAVKMPEEFSKLRNNNLVISKTIYNYLGPMELDVKVEDVFKTHVTDDEDNIPLVFLNSNGDADSNDYYDEDLEKNVKIDIKKEGFEDNAQTDISNSKKKCKKKVKEGFTSRMVTETTEYIVIKLTKEEILEEMQQKSNSEKYKLLPYKCEKCVRGFNFEDVLQTHMEKHSPNNGPFQCELCEQFCPSKVSLRGHMKSHSTRYKCKLCSLVRLSRQHILEHYSLEHTASAALYRCPECPHTTNKRTAMQRHVKLHSSNKPLKCKLCGKFYKSKESLRVHIMRHDDKKLHQCDLCTSSFVYAIQLTKHMLSVHERKDYYCVECDIMFKSMGNLKQHLERAKVHRDSSSYKYQCPHCDKRFISQSTLATHNSVSHGAAKTARCSQCTRSFTSVDALRGHTRRSHAQTRSVLPCTMCDRVFSRKYVLRVHMRTHTGERPHTCACGAAFAQPAALRAHCAAKHKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00695908;
90% Identity
-
80% Identity
-