Hmis019132.2
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- -
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000024.1:4946571-4955873[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.005 0.44 11.9 1.0 3 23 579 600 578 600 0.96 2 22 0.048 4.2 8.8 0.6 1 22 986 1007 986 1007 0.95 3 22 6.9 6.1e+02 2.0 0.3 1 22 1048 1069 1048 1071 0.82 4 22 0.24 21 6.6 0.9 1 20 1080 1099 1080 1101 0.80 5 22 0.0062 0.55 11.6 0.1 3 23 1151 1172 1149 1172 0.96 6 22 0.01 0.92 10.9 4.4 1 23 1178 1201 1178 1201 0.95 7 22 0.13 11 7.4 0.0 1 23 1227 1250 1227 1250 0.90 8 22 0.019 1.7 10.0 3.4 1 23 1255 1277 1255 1277 0.97 9 22 0.01 0.88 10.9 0.2 1 23 1283 1306 1283 1306 0.95 10 22 0.0011 0.095 14.0 1.3 1 23 1318 1340 1318 1340 0.98 11 22 0.0015 0.13 13.5 4.0 1 23 1384 1407 1384 1407 0.96 12 22 0.0044 0.39 12.0 1.6 1 23 1467 1490 1467 1490 0.96 13 22 0.0011 0.1 13.9 2.1 2 23 1514 1536 1513 1536 0.95 14 22 0.09 7.9 7.9 0.1 2 23 1542 1564 1541 1564 0.93 15 22 0.01 0.9 10.9 0.2 1 21 1608 1628 1608 1629 0.95 16 22 0.0013 0.11 13.7 0.6 1 23 1639 1661 1639 1661 0.93 17 22 0.00027 0.024 15.8 0.4 2 23 1749 1771 1749 1771 0.93 18 22 1.8e-07 1.6e-05 25.8 1.1 3 23 1778 1798 1777 1798 0.98 19 22 0.0033 0.29 12.4 0.8 1 23 1814 1836 1814 1837 0.94 20 22 0.12 11 7.5 0.0 1 23 1858 1880 1858 1880 0.97 21 22 0.028 2.5 9.5 0.6 1 23 1886 1909 1886 1909 0.95 22 22 0.00026 0.023 15.9 0.4 1 23 1917 1940 1917 1940 0.96
Sequence Information
- Coding Sequence
- atgaGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGATGCGAATTACTACCGATATTtcctaccaccagttcggatgACTCGGAACCTCCTGTCCTCGCTTCGAAAATTAAAGATTGCGTGTCAGTGCAGATAAGCGAGAATGACGACCTGCCAACTAATGTCTGCAGGAAATGCATGGACAATGTGAATAACTGGCACATTTTTAAGACAGTATGTGAAAGGACACAAAACAAGTTACAGTCTCTAATTAATAAGGAGAGCAGCCAACTAGAAGAGGTGAAAATTAAAAGTGAGCCTTTATCAGATGAAGCTTATGATGATGGAGTGGTTATTGATGGATCATATCCAGATAGTGAGaATGCAGGCTCATCGAGTAGAGTGCAGCCTGAAGGGCCACCTATTTTGGCTTCACTTGGACTCACACCGAGAAGTGATAAGAAAAATATAGATCCTCGGTTGGATTGGCATCGAGTTCATGCCATACTGGATATGGTCCAAGAAGATGAGGTCATTGACTCTCTACAGTCTTTGGAAGAATGTGATGTGATACATCAGTCAGACCATGATTCCGACTCTGAAACAGACTTAAATAATGACGATGTACTTGATGACTTCATTGATTGTAAGAATGGATATATGTGTAGAAACAGGAAAATTATATCGAAATATCCTAAATTATCAACTGCAGAttctataactaaaataaaacaagttacTAATTTACGGAAACGAAACCTTGTTACATCCAAAAATTGCCCTCAACCTAAAGCCGCTTGGCAGCTGCTTTTTACAGATGATTTACTGGAATTGATTGTAACGTCAACAAATGAGAAAATactgaaaaataataacaaacaatccgatcatacaaatgtaattgaaaTCAGAACACTAATAGGAATACTTTATTTTCATGGCATAATGCGACCTACACATCAGAAATACTGTGACCTCTGGCATAATGAGTATGGAGCACCTTGTGTTCGAAATGCAATGACTTTAGAGAGATTTAAATTCCTTCTGAAAAACATGAGTTTTGATAATGAGGATGACGATAGCATTGTGCAGTTTGATGTTATGAAGCGAATGAGGAAAGTCTTTGAAATATTTGCATTGAACTGTAGAACTTCATTGGACGTTGGGAATTTAGTTGTTATTGATGAGGTCATACTACCAGTTCACGGGCCTTGTCCATTTCGatacaatataaaaacgaaaaatttCAAAAGCGGCCTAAAACTCGTATTATTAATAGACCCAGTAAATTTTTACGTAACAAACTTAGATGTTATAACTGATCCTTATTTTGGATGTGACGAAATAGCAGCAAAGTTGGTACAACATTTAGCTGGTACGGGAAGGACTGTGATCATGGACAGCTGGTTCACATCCAATACTCTGATGAATCAACTTAAGATGGAATACAAACTATTTAGTATTGGAGCTGTTAACCCAAAAGATGATATTATACCACCACTTTTTTTATCTAgttacagaaaagaaaagacgttTATTAGTGGATTTTTGGATAAAGACATTTGTCTCGGTTCATATGGGATGGAGAGTGAGAAAGATGAAGACTATGAAGACGAGGAAGAGATGATGGAGCAGCAAACATTTACAAATATGCCTAATATGCCTGAAGTTTCGATTACTGTGATGCGCCCTACAGGCGAAACTCTACATGCTCGCCAAGGAATTCAACAGCTGGCTTCAAAAGATTGTTTAGTATGTGGCCGATCTTACAGGTACTCTCATAACGCTCGGCGACATGAACTTACAGCACACAATTTCGATAGATACACCAATAAAATAGCTACAAAGAAATCTCATACGCATATGCAACCAAAATTTAGACCGAATCCATTCAATCCTAAAGCAAGGTTAATGCCAAATCCTATCAGTCACAAAATGCAATTCCATCCTAAGTCAATACCAACTAAAATGATGCCTCAGAAGATTGTTGCTCCACCAAAGCCTATACCAATAAGAACTGGAAAATCTCAGCAAAACAACTTACCATATCCACTTCGCATAAAAGctcttaaagatttacaaataaagaaaaaagaaccTCAAATTTTAAAGACTTTACTAACTGCTAAACCAGAAGTCTTAGTATCTGAACCAGAAATTATCAATTCGGGACCTGAAAGTCCAGAAACATTAATATCGGAGCCAGAAATAGCATCCTTCCAAGTGGAAGCAATCTTGTCCGAGCCAGATGGTTTTGTTAATCAACATCATGAAGACGATGAAATCGATGACGACAACAACCAAGGACAGAATTATGATACTGTCGACATGGATTctgaaaatgaaattgaaattgcTCGCCAGCAAGAAAATGATATTCAAGATGATGAAAATCAGGATGTACATGATGGTGAACATGATGGTGAAGAAAATACTCAAGAAGATGATAATAATATGGAGGAAGCCAATGATAACGAGAAAGAAAACCATGAAGATAATGGCGAAAGTCAAGATAATATGGATatggaaaataatattgatgAAGAAACCGATGCAGATGATGATAATGCCAAAGAAAATGATGAAGAAAATGGAGAGAAGGATAATGATGAACAAAATATGAATCATGAAGAAAATGAGGATGATGATGATTTGCCTCCCATGAGTATAGCACCAGTTGTTGAGATAAACGAGGAAATGcaaataaattcttataataGTGATGGTAATGAGGAAGAACTTGATGAAACTGTGGATCCAAATGATGCAGTAGACGGAGATGAAGGTGAAAAAGAGGTAGATCCAGATAAAGTTTATGTTACGAAAACGCAGAGAGATTTTATTCTCAAATACCGCGATATAATACAACAAATTAACACCAAGCGATGTCTTTGTTGTAACAAAGAACATCCTCGTCGGAAAGCAGTCATACAGCATTTACAGAAAAATGGACACAAAGTTCCTAAACATACATGTTACAATTGTGTGGTAACGTTTACTCATATAGGGGCTTTGCTCAGTCATATGAGATCCAATACTTGCACAGATCTTTGGAAAATAATCTATAACGAAAATGGTATTACTGATGATATAGTACTAGAAGATCCTAAAGACATAAAAGTCCAATACAAAGATATACTTAATGCTCGATCTTACGCATGTAAATTATGTCCAgcgaaatttcaattaaaacaatttattatgaaGCATGTTCTTGATGTACACGAAGATGGTCAATCTCGTTTCCCTCATTCTTGCGTGCATTGTGGTATACGATTCAAAGACAAGAGTATAGGAAAGAGACACATACGTAACGGAGATTGCACAGTCGAAATTTGCTGTGAATTATGTTCAGAGAAGTTCTTAAGTTTGCAAGAGTTTAATGACCATGCTGTAAATATACATGCTGGCAGCTTTGATCCTGATAATCAGAGCAAGTGTGTCGACGGTCGACCTACAGATTGTCCTATTTGTGGAAAGAAGAACAGTAGTTATCCGAATTTGGttaagcatttaaaaataattcataacgAGGAAAAGCCTCATCACTGCCAACATTGTGATGCTAAGTTCGAGCAAACTGCTGATCTTAATAAACATATCTATATGGAACACTCCGATAGATCACTGGGTATGCCGACTAATGAACCCGATATGTCTCTCGTAAAAGAGGAAGCAGAAGAGTACCATTATTCTTGTACAGAATGTAATGCTATATTTGAGACCGTCGACGCTTGGACAGATCATCAGGTAGCGGAACACAATCAAATCGCTCATCACTGCGATCAATGCGAGAAGAAATTCTTGCGTCCATCAGAACTTGCAGAACATAAGAATACACATTTGCGTGTTAAATTCTACCCTTGTAGCATCTGTTCTAACTCGTATAGCACACCGCAAAAGCTATCCGAACACGTTCAGCAGGTTCATCCTGGAGTAGCGACGCGCTCTGGTGAAACTGAATTTTACTGCGACATATGTATACGGTCGTTCAAAAGCCGCCAGGCGTATTCTAACCATATGCGTATTCATTCGAGAGTGCCTACAACTAATAGAAAACCTGGAGAAAGTAAAGGATTTGGACCGCAAATAATTGGAAAACCCATTCAACGCCATTTCTCTATGCAACCGGGTTTTAGTCCTTACGTTCCTAACGCTCCTTATTGCTGTGATATTTGTGGGAAAGGATTTATGCACAAGAAAAATATATGGAAACACAAAAAGGTTCTGCATGCAGACCTTCTCAATGATAGGAACGATAGTGAAGAGAACACTATGCAAGCTTCTACTGAGGAGGATGAATATAATGTCGACGAAAATGGTGCGATTTTGTCGACCCctcaatttaatagttttaacttTACAAATCTTTCAAATAATATGCAACAGACCTCACAAGATGCCTTGCCATATTCCTGTGAATTATGTTACAAAAGATTTCCGCTTAGGACTAGTTTATGGAAGCACAAACGCGCAAAGCATGGAGTTGTTAATACGAGTACAGGTGGGGCTTCTGAAACACAAACACAATCTTCGAGTGAGGGTAGATCGAGCTGCACtatttgtaaaattactttttcagATAAGAAATCTTATTATCGTCATAGAAAAAATGTTCACAAATCTACAGTTCAAATGTGCAAAATATGCGGAAAACCTCTTAATTCAACTTTAGAACTTTATGAACATCTCAAAGCAGCACATGCTCGAGAGCTGCTAGGTTATAATGCTAATCAAAGCTCGAGTAAATCTCAGGATATGAGTCAAGAAATGGATGTAGAGTATGATGGTGATCAAGACTCAGTCGATCCCAGTGTTGATTATCAAGCACGTTACCCTTGCGACACTTGTGGCAAACAATTTGTCGGATTATTGGCTCTGCAAAATCATCAATGTATCAATCAGATACAAAACCAACCTCAGACGTTCGATTGTGAAATATGTCACAAGAGTTACACTTCTATTGCTGCTTTGAAAAGCCACCGAGGTTGGCATCTACGTTCCCCCGACGGCAAAGCCGCGGCTAACAACACTGGACTTTGGATGCCCCAAAACAAAGTTACCAGTAAAGTGAGCAAGCACGAAGTAGTGGATACAGTTCCTAGGGCACAGACTTCGACTCCAGCCACCTTAGCTAAAAGGAGATTGCCTCCAGAGGTAGAAGTGACTGTCGTGAATCCTAATAAAAAATTGCGATCAGACGATTCAATTGAAATGGATCATCAGAACAATTTATCGGGTGGAGCCGAAGATAGATACTGTAATCTATGCGATAAAGAGTTCACGAAGCGAGCGGCGTACCAGCGTCACATGGACGAAGTGCATCAACCGAACTCCGTATTTTGTCCCGTGTGCGACAAGAGCTTCACGCGGAAATCGACTCTGATCGTGCATATGAAGAAACACTATGAAGGCGGGGAAGGGAGTTCGACACAGATGGACGATGATGGACACGCGTGTGAAGTGTGCGGCGCTCAATTCGAAAGTGTAAAGGCTTTAAATTCGCATATGACTATGCATCACGGTGAAGATTCAGGTGAGTCTGATGACGATGGGGGAGCCCCCGCCCCGCCCCCCGGAGAGTTCACATGCGGTCAATGCGGCGACGGTGTCGCCACCCCACGGGATTTGATAGCCCACCGAACAATGCACGCTACTCCAACTAAATTCTTCTGTAATATCTGCAAGGTCTACTTCGCCCGAGCTCTCGACTTGTCCTCCCACACTCGAGCTCGACACTCCGACAACGAGAAAGTATTCTTCCCTTGCGCTATGTGCGATCGGTTCTATATGAACAAGAAGAGCTTGCAGCGACACATCGAGATGGCGCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRCELLPIFPTTSSDDSEPPVLASKIKDCVSVQISENDDLPTNVCRKCMDNVNNWHIFKTVCERTQNKLQSLINKESSQLEEVKIKSEPLSDEAYDDGVVIDGSYPDSENAGSSSRVQPEGPPILASLGLTPRSDKKNIDPRLDWHRVHAILDMVQEDEVIDSLQSLEECDVIHQSDHDSDSETDLNNDDVLDDFIDCKNGYMCRNRKIISKYPKLSTADSITKIKQVTNLRKRNLVTSKNCPQPKAAWQLLFTDDLLELIVTSTNEKILKNNNKQSDHTNVIEIRTLIGILYFHGIMRPTHQKYCDLWHNEYGAPCVRNAMTLERFKFLLKNMSFDNEDDDSIVQFDVMKRMRKVFEIFALNCRTSLDVGNLVVIDEVILPVHGPCPFRYNIKTKNFKSGLKLVLLIDPVNFYVTNLDVITDPYFGCDEIAAKLVQHLAGTGRTVIMDSWFTSNTLMNQLKMEYKLFSIGAVNPKDDIIPPLFLSSYRKEKTFISGFLDKDICLGSYGMESEKDEDYEDEEEMMEQQTFTNMPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHNFDRYTNKIATKKSHTHMQPKFRPNPFNPKARLMPNPISHKMQFHPKSIPTKMMPQKIVAPPKPIPIRTGKSQQNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEIINSGPESPETLISEPEIASFQVEAILSEPDGFVNQHHEDDEIDDDNNQGQNYDTVDMDSENEIEIARQQENDIQDDENQDVHDGEHDGEENTQEDDNNMEEANDNEKENHEDNGESQDNMDMENNIDEETDADDDNAKENDEENGEKDNDEQNMNHEENEDDDDLPPMSIAPVVEINEEMQINSYNSDGNEEELDETVDPNDAVDGDEGEKEVDPDKVYVTKTQRDFILKYRDIIQQINTKRCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRSNTCTDLWKIIYNENGITDDIVLEDPKDIKVQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRFPHSCVHCGIRFKDKSIGKRHIRNGDCTVEICCELCSEKFLSLQEFNDHAVNIHAGSFDPDNQSKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEEKPHHCQHCDAKFEQTADLNKHIYMEHSDRSLGMPTNEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICSNSYSTPQKLSEHVQQVHPGVATRSGETEFYCDICIRSFKSRQAYSNHMRIHSRVPTTNRKPGESKGFGPQIIGKPIQRHFSMQPGFSPYVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMQASTEEDEYNVDENGAILSTPQFNSFNFTNLSNNMQQTSQDALPYSCELCYKRFPLRTSLWKHKRAKHGVVNTSTGGASETQTQSSSEGRSSCTICKITFSDKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQSSSKSQDMSQEMDVEYDGDQDSVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQIQNQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQNKVTSKVSKHEVVDTVPRAQTSTPATLAKRRLPPEVEVTVVNPNKKLRSDDSIEMDHQNNLSGGAEDRYCNLCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSTQMDDDGHACEVCGAQFESVKALNSHMTMHHGEDSGESDDDGGAPAPPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -