Hmis001611.1
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- -
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000002.1:3334691-3342107[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.04 3.5 9.0 2.5 1 23 28 51 28 51 0.94 2 27 9.1 8e+02 1.6 0.1 2 23 77 99 76 99 0.75 3 27 0.026 2.3 9.6 3.1 3 23 124 144 122 144 0.96 4 27 0.00047 0.042 15.1 0.3 1 23 148 170 148 170 0.97 5 27 0.0043 0.38 12.1 1.0 1 23 177 200 177 200 0.97 6 27 0.0087 0.76 11.1 1.9 2 23 208 230 207 230 0.95 7 27 3.1e-06 0.00028 22.0 0.7 2 23 236 258 235 258 0.97 8 27 2.5 2.2e+02 3.4 0.9 1 23 264 287 264 287 0.86 9 27 0.0035 0.31 12.3 0.2 1 18 293 310 293 310 0.94 10 27 0.011 0.95 10.8 0.0 1 23 397 420 397 420 0.94 11 27 0.0059 0.52 11.6 1.2 1 23 491 513 491 513 0.97 12 27 0.0027 0.24 12.7 1.5 1 23 517 539 517 539 0.98 13 27 0.22 19 6.7 1.5 1 23 544 567 544 567 0.90 14 27 0.0051 0.45 11.8 1.8 2 23 575 597 574 597 0.95 15 27 6.5e-05 0.0057 17.8 1.5 2 23 605 627 604 627 0.97 16 27 0.00071 0.063 14.5 1.9 1 23 632 654 632 654 0.95 17 27 5.8e-06 0.00052 21.1 1.8 1 23 660 682 660 682 0.99 18 27 0.0029 0.26 12.6 3.1 1 22 688 709 688 709 0.97 19 27 0.0021 0.18 13.1 1.9 1 23 775 798 775 798 0.93 20 27 0.0021 0.19 13.0 2.0 2 23 870 891 869 891 0.97 21 27 0.00087 0.077 14.2 0.4 1 23 895 917 895 917 0.98 22 27 0.0088 0.78 11.1 0.5 1 23 922 945 922 945 0.97 23 27 0.02 1.8 10.0 2.1 2 23 953 975 952 975 0.92 24 27 0.0021 0.19 13.0 2.9 1 23 982 1005 982 1005 0.98 25 27 0.0011 0.097 13.9 1.9 1 23 1011 1033 1011 1033 0.97 26 27 1.2e-06 0.00011 23.2 1.3 1 23 1039 1061 1039 1061 0.99 27 27 0.00022 0.019 16.1 3.4 1 23 1067 1090 1067 1090 0.97
Sequence Information
- Coding Sequence
- ATGCAGAAACAGTGGCACAATCTGACCACTCTGTTGAAATACTCGAACGCTACACCGTTCAAGGACAGGAACGACGCAGGTTATATCTGCGCGTACTGCTATAAAACCTACCCCGACCCCAACGTCCTCAGACACCATACCCACTATGACCACGATAAAGAGAAACCAACGTACAAGGCCGGGTCAGGGATGAGTAGTTTTGTAGCTTTCTTAGATATAGTCGACTTGAAATGTACGATCTGTGACCAAAATATGGAGAGCATAAACGTTCTAACCGAACATCTAGTCAAGGAGCACGATAAGAAGTATTATTTAGGTGTCACCGATTATTTTCAGCCGTTCAAATTGACGAGCGAGCAAGTCATAAATTGCTGTCTGTGTGATGAGATATTTCATAACATGAAGCTGCTAATGCAACACATGAATATGCACTATAGGAATTTTATATGCACGATATGCGGTGCAGGGTTCGTGAATAGCTTCCGGCTTAACAGGCACGAGACGACGCATGGAAAGAAAAAGTCCAGCTTCACATGTCGACATTGCGGTCAGGTGTTTGCAGCGGAATCGAAGAAGAAGGCTCACGTTAACACAGAGCATAAGGGCATAGCCGGTGATAGCGTCTGCCAAATCTGCAAATCTAGATTCAAGAATTACTATCAGAAAACAAGACACATGATGCAAGTCCACAATGTAGAAGGGATTAAATGTGATATGTGcgataagaaatttaatttaaagtcgaATCTCGTTTTGCACATGAGGAGTGTCCACCTCAAAGAGAGGCCGTACGAATGCTCTGTATGCAGTATGGGTTTCTTCATCAAACGCCACATGCTTGGACACTATTTGGCAACGCATACCAATGAAAGGAAGTTCAAATGTGACGTCTGCGGTAAAGCGTACGCCACGCAGAATAGTCTCGAGAAAGAAACCTTTGTTGAAATATCAATCAAACAGGAACCTACATCTGATTCGGAACAACAAGACGATATCGAGACAGTTGTAAAAATAGAATCAATAAACGATAAAGATCCGGAGAAGGTAACCAAAGATGTCAAAAAAAGTACAGCCGACAAGAAATCAAAGAAAGAACAGGTTCTCGAAATGGAAaagcatttgaaaaatattagcaCAATTCTATTACACACTAACGCAACGCCAATAAGATATCACGATGGGGCGAACTATGTATGCGCGCTCTGTCCAGAGACATACCCTCTTCCGTCTGAGCTGAAAATGCATGTCTTAGAGGAACACGACCAAATTGACAAATCGTCTTTCATGGAAGGGCAGAGATTAACTTCTTATGTCGTCAAACTTGACATCACAAACTTGCGTTGCACAATTTGCCGCAGCGAAATCGAAGGTTTCGATCCCTTGATGGAGCATCTCAGCTCAGTGCACGGAAAGGAATTGCACAGAGATATACCAAATCACATCTTACCATTCAGATTCGTCGGAAATGGTTTCGACTGCGTCCTATGTCCTAAGTCCTTTGAACATTTCAAACTAATCCAGGAACACATGAGTATGCACTACGGGAATTACGTGTGCGAAACGTGTAAATCTAGTTTCGTTAATAAAAGAACTATGCAAAACCACGCGAACAGACATAAGAAAGGCGATTTCCCATGCGGCCagtgtaagaaaatatttgataccAATAGAAAGAAGTTGAATCACGAGAAATTTGTACACGATGGAGATTATAAGAGAAAGAAGTGTCCGTATTGTCAGGAGAAGTTTACTAATTACGCAAAGAAGAGATCTCATATGGTGAAAGAGCATGGTGCAGAACCTCTATCAGTTAAGTGCGATATATGCAAGAAAACCTTCAGCACCAGGGCTCGTTTACGAGGTCACACCAGACGAGATCACATGGAATGCCAGCACGCGTGCAAGGAGTGCGAAATGAGATTCTATACTAAACTGGAATTAGAAAAGCATATGGTGAAGCATTCGCCATTACGAGAATACCAATGCGATATATGCCAGAAGGCGTACGCGAGGAAGCACACACTGCGTGAACATTTGAAGATACACGCGAATATACGCAAATTTAAGTGCGAACTGTGTGAATTTACGTTTGTGCAAAAGTGCAGTTGGAAATCTCATATGCGTAGACGAGCTGACGGTAAAGCAAAAACTAAAGGCGTGAAACGTGTAACGAAAGTGAATGAGAGAACTGTTAGTGAAAACGAAGATGTTATACCCAAAGTGCGACAAGGGAGCGTCGAGTTGTCGAGGCATCTGATTAACGTTAGAGAAATATTGACGTGGTCGAACGCGACGCCCATACGAAACCATACGGATATCGGATACCAATGCTGTTACTGTAACGATAGCTATAGAGATCCGGCCGATTTGAAACGACACACGTTAGATAATCACGAAGGCATTAACAATTCTAGCTTCACTAAACGTCGTGATCTCAACGCGTTTTACGTTAAGATCGACATAACTGCACTACGGTGTAGACTGTGCGATGTTAATATGGAATCTATCGATGGCCTCATAGCACATCTCAAAGATATACACAAGAAAAGGTTATTCACtgacattaaaaatcatttaatagcGTTCAAATTTGAAAGCGacgaattaaaatgttttatatgttcGACTAAATTCAACAGATTCAAAGGATTGCTCGAACACATGAACAAACATTGTAGGAATTTCGTTTGCAACGTATGCGACGTTGGATTCGTTAACAGGAAACGACTTTTCGTTCACCAGGAGAAACATAGAACAGGGATATTCCAGTGCGAAGTGTGCTCGGAGGAGTTTACGACGCTACCGAAGAAGAAACTGCACATTAAATCGATTCACAAGCCAGTAAAGTTTCGGAATAAGTGCGGATATTGCAACGAAACGTTTAAGGATTATCATCAGAAGCTGAAACATTTGACTGCAGTGCATCAAGTGGAACATCATGCGTACAAGTGTGAAGCTTGCGATCGTATATATCGTACTTGTAAGTCTTTCAGAGTTCACATTCAGAGAGACCATTTACTCCAACGACCGCACAATTGCACCGAGTGTGATATGAACTTCTACTCAGGTTCTGCTTTGAAATATCACATGCTGAAACACACGGGTGTTAGAGAATTTCAGTGTGACGTTTGCCGTAAATCGTATGGGCGTAAATCGACTCTGCGCGATCATATGCGGATACATTCGGATGACAGGCGTTTCAAGTGCGAGCACTGTGGGCAGGCGTTCGTGCAAAAGTGCAGTTGGCGCGGCCACATGCGTGCGAAACACGGCGAAGAAGTCTGA
- Protein Sequence
- MQKQWHNLTTLLKYSNATPFKDRNDAGYICAYCYKTYPDPNVLRHHTHYDHDKEKPTYKAGSGMSSFVAFLDIVDLKCTICDQNMESINVLTEHLVKEHDKKYYLGVTDYFQPFKLTSEQVINCCLCDEIFHNMKLLMQHMNMHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSFTCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKSRFKNYYQKTRHMMQVHNVEGIKCDMCDKKFNLKSNLVLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYLATHTNERKFKCDVCGKAYATQNSLEKETFVEISIKQEPTSDSEQQDDIETVVKIESINDKDPEKVTKDVKKSTADKKSKKEQVLEMEKHLKNISTILLHTNATPIRYHDGANYVCALCPETYPLPSELKMHVLEEHDQIDKSSFMEGQRLTSYVVKLDITNLRCTICRSEIEGFDPLMEHLSSVHGKELHRDIPNHILPFRFVGNGFDCVLCPKSFEHFKLIQEHMSMHYGNYVCETCKSSFVNKRTMQNHANRHKKGDFPCGQCKKIFDTNRKKLNHEKFVHDGDYKRKKCPYCQEKFTNYAKKRSHMVKEHGAEPLSVKCDICKKTFSTRARLRGHTRRDHMECQHACKECEMRFYTKLELEKHMVKHSPLREYQCDICQKAYARKHTLREHLKIHANIRKFKCELCEFTFVQKCSWKSHMRRRADGKAKTKGVKRVTKVNERTVSENEDVIPKVRQGSVELSRHLINVREILTWSNATPIRNHTDIGYQCCYCNDSYRDPADLKRHTLDNHEGINNSSFTKRRDLNAFYVKIDITALRCRLCDVNMESIDGLIAHLKDIHKKRLFTDIKNHLIAFKFESDELKCFICSTKFNRFKGLLEHMNKHCRNFVCNVCDVGFVNRKRLFVHQEKHRTGIFQCEVCSEEFTTLPKKKLHIKSIHKPVKFRNKCGYCNETFKDYHQKLKHLTAVHQVEHHAYKCEACDRIYRTCKSFRVHIQRDHLLQRPHNCTECDMNFYSGSALKYHMLKHTGVREFQCDVCRKSYGRKSTLRDHMRIHSDDRRFKCEHCGQAFVQKCSWRGHMRAKHGEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -