Hmis003649.1
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- -
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000005.1:8795757-8806675[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 52 9.6 8.5e+02 1.5 0.1 1 23 185 207 185 207 0.94 2 52 0.023 2 9.8 0.3 1 23 214 236 214 236 0.98 3 52 0.25 22 6.5 0.1 1 23 240 263 240 263 0.97 4 52 2.7e-05 0.0023 19.0 1.2 1 23 268 291 268 291 0.93 5 52 0.044 3.9 8.9 1.1 2 23 298 319 297 319 0.96 6 52 4.4e-06 0.00039 21.5 1.8 3 23 333 353 332 353 0.98 7 52 0.0064 0.56 11.5 3.8 3 23 361 381 359 382 0.94 8 52 0.0006 0.053 14.8 0.4 2 23 415 437 414 437 0.96 9 52 0.094 8.3 7.9 0.7 1 23 444 467 444 467 0.94 10 52 0.088 7.8 7.9 0.0 5 20 476 491 474 495 0.89 11 52 0.55 48 5.5 0.1 2 11 505 514 504 518 0.86 12 52 0.55 48 5.5 0.1 2 11 534 543 533 547 0.86 13 52 0.55 48 5.5 0.1 2 11 563 572 562 576 0.86 14 52 1.1 94 4.5 0.7 2 11 592 601 591 605 0.89 15 52 0.55 48 5.5 0.1 2 11 621 630 620 634 0.86 16 52 0.55 48 5.5 0.1 2 11 650 659 649 663 0.86 17 52 0.55 48 5.5 0.1 2 11 679 688 678 692 0.86 18 52 0.55 48 5.5 0.1 2 11 708 717 707 721 0.86 19 52 0.55 48 5.5 0.1 2 11 737 746 736 750 0.86 20 52 0.55 48 5.5 0.1 2 11 766 775 765 779 0.86 21 52 0.55 48 5.5 0.1 2 11 795 804 794 808 0.86 22 52 0.55 48 5.5 0.1 2 11 824 833 823 837 0.86 23 52 0.55 48 5.5 0.1 2 11 853 862 852 866 0.86 24 52 0.55 48 5.5 0.1 2 11 882 891 881 895 0.86 25 52 0.55 48 5.5 0.1 2 11 911 920 910 924 0.86 26 52 0.55 48 5.5 0.1 2 11 940 949 939 953 0.86 27 52 0.55 48 5.5 0.1 2 11 969 978 968 982 0.86 28 52 0.55 48 5.5 0.1 2 11 998 1007 997 1011 0.86 29 52 0.55 48 5.5 0.1 2 11 1027 1036 1026 1040 0.86 30 52 0.55 48 5.5 0.1 2 11 1056 1065 1055 1069 0.86 31 52 0.55 48 5.5 0.1 2 11 1085 1094 1084 1098 0.86 32 52 0.55 48 5.5 0.1 2 11 1114 1123 1113 1127 0.86 33 52 0.55 48 5.5 0.1 2 11 1143 1152 1142 1156 0.86 34 52 0.55 48 5.5 0.1 2 11 1172 1181 1171 1185 0.86 35 52 0.55 48 5.5 0.1 2 11 1201 1210 1200 1214 0.86 36 52 0.55 48 5.5 0.1 2 11 1230 1239 1229 1243 0.86 37 52 0.55 48 5.5 0.1 2 11 1259 1268 1258 1272 0.86 38 52 0.55 48 5.5 0.1 2 11 1288 1297 1287 1301 0.86 39 52 0.55 48 5.5 0.1 2 11 1317 1326 1316 1330 0.86 40 52 0.55 48 5.5 0.1 2 11 1346 1355 1345 1359 0.86 41 52 0.55 48 5.5 0.1 2 11 1375 1384 1374 1388 0.86 42 52 0.55 48 5.5 0.1 2 11 1404 1413 1403 1417 0.86 43 52 0.55 48 5.5 0.1 2 11 1433 1442 1432 1446 0.86 44 52 0.55 48 5.5 0.1 2 11 1462 1471 1461 1475 0.86 45 52 0.55 48 5.5 0.1 2 11 1491 1500 1490 1504 0.86 46 52 0.55 48 5.5 0.1 2 11 1520 1529 1519 1533 0.86 47 52 0.55 48 5.5 0.1 2 11 1549 1558 1548 1562 0.86 48 52 0.55 48 5.5 0.1 2 11 1578 1587 1577 1591 0.86 49 52 0.55 48 5.5 0.1 2 11 1607 1616 1606 1620 0.86 50 52 0.55 48 5.5 0.1 2 11 1636 1645 1635 1649 0.86 51 52 2.1e-05 0.0019 19.3 0.2 2 23 1665 1686 1665 1686 0.97 52 52 6.9e-05 0.0061 17.7 1.6 1 23 1691 1714 1691 1714 0.96
Sequence Information
- Coding Sequence
- ATGGACCAACCGCCAGAATTGTTACCAAATTTGCAAATAAAAGTGGAACCCGAAGATCCAACATATGAAGTTGAGGTTGAATtagatttaaaagtaaaacacgaAGACGCCAAAGAGGTTGCAAACAATGTTCCAGAAAATTTTGTTGGTATAAAACAGGAAATACCGGATAATTTGGACATCAAAATAGAACCAATAGATCAAGATGAGGACTACGAAGAAAACCAAGAAATGGTTCCGGAACAAATGGTTATGAAAGTTGATCCAGATTTTTATGGCAATGcaccttttaatatatatgATGGAAAACAATTATCTACCTCAAGAGGAATGAGAAACAGCAAAGATGAATCGGATGATGAGTACTTGCCTCCTAAGACAAAGAAGAAGaaaaaggAACCCAATGTTAAACCTCTATTCAGAGGTAAACAGCGAAACGATGAACAGACATACTCTGACGATATAACAAAACATATAGAAATAGTGACAATAGATGAAGCTGAACGCCTCGTGGAACACCATGACTTGTTCAATAGTCGGAAGCATATGAACTACACTTGTGAACCGTGCGCCTTGGGGTTCGTCATTGAAGATGCTTATCACATGCACATGAAAATACATTCGCCGGAAAACGGCGACTACTCGTGCGATATATGCAGCGTACGCGTCAAGACCGCGGATGTGTTGTACCGCCATCGTTTACGGCACTACCGCCGATACCGCTGCACATTGTGTGCCCTGCGCCTGCGCGACAAGGACACCGTCGCCGCACACGTGATGCGCGAGCACGTCGGGCAGGCATTTGTTTGCGCGCACTGCGGCCGCGGGTTCAAACGTCCTCAGTACCTGAAACGCCATGTAGAGCAAATGCACACTAGGCCGTTACATCTCGAGTGCCCAGTATGCAAACGCGTTTTCTACGAGCGAGGCTGGTACAGATGCCATGTTAGAACCCACAACGAAGAAGTCCGCAAGAATATAGACAGGAAGGCAATATGTTCACACTGTGGACGCGAGTTCAGAAACAAAGCTTATCTCATCCGACACCTGCAAACACACGAAGACCGGAAGCCAGTCATCTGTAAACATTGTTCTAGAACGTTCAAGAACATTGAAGTTCTACGGGTACATTACAGGCAGCATCACGCGAAGAATCCTCTGAATGAAGACGGCAGTTACAACGAGAAGTTTATGGGTCGTACTTATGCTGCGCAAGGTGTTGGGGGTGCGGGTGCGAACACGACGTGCGATCAGTGCGGGCGCGTACTGACGACACGTGCGATGCTCGCGAGACACACGCAGCGTATGCACACTGAGCGCATCAGGAAGTTCCAGTGCGATTATTGCAAAAAGTGGTACTTCACGAAAGCGGAGGTCCGCTCGCACATCGAGTGGACGCACCTGCAGCAGCGGCGGCACGCGTGCGGCTGCGGGCGAGTGTTCCGCACGCCCGCGCGCCTGCGCCAGCACGCCGGCGCCGTGCACCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTAtgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCAGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCAGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCCGCGCGACAAGACGTGCCCTCTGTGCGGGAAGATGTTCGCGGTacgtacactacactacactacactgcaCCTGCACATCGAGCCGCTGCTCGACGAGACGTGCCCTCTGTGCGGAAAGATGTTCGCAaACCAACAAGTCCTAACGCGCCACATCAAAGGCCACTCCGGCGAAACCTATCCATGTAGCGAATGCGGCCAAAAGTTCAAAACGCAATCGTACGTGAAAATTCACTACAAGCTGAAACACCTCAAGATGTCTCGGGCGGAAATCAAAGCGCAAAGCAAGAGAAAGTTGATCACCATCGAAAGGACCAGCGATGAAACTCAAGCCAGAATAAAAGGTATACCCATCCCTAATACGAATATCGCCGATCCGCTCTTTATTAACGAGCAAGAAAGAGAGGTCGGTTTAAAAAACGATACCCAAGATATATCTGTGCCGTTGTTTGAAACGTTCGTCGATATACAGCGTGAGTGCTGA
- Protein Sequence
- MDQPPELLPNLQIKVEPEDPTYEVEVELDLKVKHEDAKEVANNVPENFVGIKQEIPDNLDIKIEPIDQDEDYEENQEMVPEQMVMKVDPDFYGNAPFNIYDGKQLSTSRGMRNSKDESDDEYLPPKTKKKKKEPNVKPLFRGKQRNDEQTYSDDITKHIEIVTIDEAERLVEHHDLFNSRKHMNYTCEPCALGFVIEDAYHMHMKIHSPENGDYSCDICSVRVKTADVLYRHRLRHYRRYRCTLCALRLRDKDTVAAHVMREHVGQAFVCAHCGRGFKRPQYLKRHVEQMHTRPLHLECPVCKRVFYERGWYRCHVRTHNEEVRKNIDRKAICSHCGREFRNKAYLIRHLQTHEDRKPVICKHCSRTFKNIEVLRVHYRQHHAKNPLNEDGSYNEKFMGRTYAAQGVGGAGANTTCDQCGRVLTTRAMLARHTQRMHTERIRKFQCDYCKKWYFTKAEVRSHIEWTHLQQRRHACGCGRVFRTPARLRQHAGAVHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVCTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPQRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPQRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPPRDKTCPLCGKMFAVRTLHYTTLHLHIEPLLDETCPLCGKMFANQQVLTRHIKGHSGETYPCSECGQKFKTQSYVKIHYKLKHLKMSRAEIKAQSKRKLITIERTSDETQARIKGIPIPNTNIADPLFINEQEREVGLKNDTQDISVPLFETFVDIQREC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -