Hmis001537.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypolimnas misippus
Gene Symbol
-
Assembly
GCA_008963455.1
Location
JBBEEQ010000002.1:2710012-2716478[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 38 0.054 4.8 8.6 0.9 1 21 82 102 82 103 0.96
2 38 0.0061 0.54 11.6 0.4 2 23 175 196 174 196 0.97
3 38 0.029 2.6 9.5 0.1 1 23 200 222 200 222 0.95
4 38 1.2 1e+02 4.4 0.7 1 15 227 241 227 250 0.78
5 38 0.027 2.4 9.6 0.2 1 23 256 279 256 279 0.95
6 38 0.0029 0.26 12.6 1.2 1 23 286 309 286 309 0.98
7 38 0.00012 0.011 16.9 1.2 1 23 316 338 316 338 0.97
8 38 1.1e-05 0.00094 20.3 4.4 1 23 344 366 344 366 0.98
9 38 0.00044 0.039 15.2 0.7 2 23 370 392 369 392 0.96
10 38 0.0034 0.3 12.4 0.3 1 23 468 491 468 491 0.96
11 38 0.00024 0.021 16.0 0.5 1 23 588 610 588 610 0.97
12 38 0.0009 0.079 14.2 0.4 1 23 644 667 644 667 0.90
13 38 1.2 1e+02 4.4 3.7 1 13 674 686 674 688 0.90
14 38 0.65 57 5.2 0.4 1 23 732 754 732 754 0.92
15 38 0.002 0.17 13.1 1.8 2 23 779 801 778 801 0.97
16 38 0.0031 0.27 12.5 1.3 1 23 823 845 823 845 0.98
17 38 0.043 3.8 8.9 4.6 1 21 849 869 849 871 0.95
18 38 0.38 33 6.0 0.1 3 23 878 899 876 899 0.85
19 38 0.0053 0.47 11.8 4.4 1 23 905 928 905 928 0.96
20 38 0.011 0.98 10.8 1.2 1 23 989 1011 989 1011 0.95
21 38 0.057 5.1 8.5 0.1 2 23 1035 1057 1034 1057 0.94
22 38 1.6 1.4e+02 4.0 3.0 3 23 1081 1101 1080 1101 0.97
23 38 0.003 0.26 12.6 3.4 3 23 1107 1127 1106 1127 0.97
24 38 0.0032 0.28 12.5 3.6 1 23 1134 1157 1134 1157 0.98
25 38 0.028 2.5 9.5 4.1 1 23 1163 1186 1163 1186 0.96
26 38 0.015 1.3 10.4 0.7 1 23 1192 1215 1192 1215 0.97
27 38 0.0013 0.11 13.7 0.3 1 23 1221 1243 1221 1243 0.97
28 38 6e-06 0.00053 21.1 2.5 1 23 1249 1271 1249 1271 0.98
29 38 0.037 3.2 9.1 1.2 1 23 1322 1344 1322 1344 0.94
30 38 0.75 67 5.0 0.4 2 23 1368 1390 1367 1390 0.94
31 38 0.01 0.89 10.9 3.3 3 23 1414 1434 1413 1434 0.98
32 38 0.003 0.26 12.6 3.4 3 23 1440 1460 1439 1460 0.97
33 38 0.0043 0.38 12.1 2.6 1 23 1467 1490 1467 1490 0.97
34 38 0.00019 0.017 16.3 3.2 1 23 1496 1519 1496 1519 0.97
35 38 0.007 0.62 11.4 0.7 1 23 1525 1548 1525 1548 0.97
36 38 0.00065 0.057 14.7 0.5 1 23 1554 1576 1554 1576 0.97
37 38 2e-05 0.0018 19.4 2.6 1 23 1582 1604 1582 1604 0.98
38 38 7.3e-05 0.0065 17.6 5.3 1 23 1610 1632 1610 1633 0.96

Sequence Information

Coding Sequence
ATGGACAGTGGAAGAATTGACAcaagttttctatttttaggAGAACGTGGAAAAACCGAAAATGCAACCGCTATAAAAGTAGAGTCCTCTGAAAAATTGCTTTTAGAAGATTCACTAAAAGTCACAGAAAAGAAACGTTATCAAAGAAGTGCAAGAGCCGAAGCGAGGTTCGTAACTAAGAAGAACGCGACCACTATCCTCGAATGTTGGACTCTTTGTCCCTTTAGATGGAAACGAAATCGATTCAAATGCGCTTACTGTGAGGATAACTTTACAGAATGTTCAGAACTAAGAAGTCACGTCAGAATTTGTTCGACTCAACACAGCGTTAAAGACATATACAGTAAATTCAAGGAAATGTCTCTTATAAACATTGACGTAACTGAAGCTAGTTGTAGGCTTTGTGCTATGCCCTTCCGAGGAGTTAACGAAATGCGTTATCACGTCATAGAACACGGTTATGATTTCGACACATCCCATCCGGACGGTGTACTACCATTCTATTTGGACAAGGAGGCCTGGAAATGTGTTATTTGTCAGGAAACCTTTAATAATTTTCTCAAGCTTTATGAACATATGAATATTCATTATCAACATTATATTTGTGCAACATGCGGTAAAGGGTATATGACGGCACCTCGTTTGCGTAAACATTCGGAAGTTCATATAACTGGAACATTTCCGTGTGATAAATGTAGGCGAGTTTTTACTATGCGTGCGGCTAGAGATTATCATAAAGCTCACGCTCACGCTAAGGGTCCGCGTTATGAATGCCCGCAGTGCAATATGAGATTTGCAGGCTATTATGAGAGAATGAATCACTTGAATGAAGCACACAGAGAGAAAGAAGTATCCTATAAGTGTGCCCATTGCGAGTTATCTTTCAAAACGAGTGGAAAGAGGGCTGTCCATGTGAGATCAGTCCACTTTCCTCAACAGCGAAATTTCGCTTGTCCCTTTTGTAAATGGTTTTTCAAGACTGGCTATGAATTAAAAAGGCATATGGTCAAACATACGGGTGAACGTAATTTTTGTTGTACGATTTGTGGCAAAACATTTCAGAGGAACAGAGCGTTGAGGACACATTTGAAAACACATGAAGATCTCAGTTGTAAATGGTGCGGAGTTTTGTTTAAGCAAAAGACATTACTATTGACGCATTTGCGTACAAATCATCCTGATATCAgtCCCGCTATTGCGGATACACAGGGGGTAAAAGTTAGACGGGTTAGGAAGTTAAAGGAGAATGTTTGCGCCAGGCAGAAACGTCGACGACGGCGTGCTAACAACGAATTGCCAGAGGAATCAGAGAAACGAATAGCGAAAACGATGATGCGTAGAAACGCAATGACGCTTCTCGAATGTTCCACGGCGTGGGCCTTTCGTTGGTTCCAAAGCTCGTTTTTTTGCTCTTACTGTGATGCTAAATTTGTCGATCCATTACTTTTACGCGATCATGTCAACTCGTTTCATATTGCCGACATACCTACTAATCGAGTATTTTCAAAACTAACTGAAAATAATATGGTAAAGGTAGACGTCTCAAATGTACTTTGTAGGATGTGTAATTGTAAAATAGAAAGCATAGACTTTTTAAAGAAACACTTAACAACTGTTcacgaaaaaactttttatcaagatTATAACGATGGAATACTGCCATTTAAACTTGAATCTAACGGTTTCGAATGCCAAATATGCTGTGCccattttacaagtttttgtaAGATTAATGAACATATGAACACACactataagaattatatttgcgATGCTTGCGGCAAAGCCTTTGTATCTAAATCGCGTTTTAGGACGCATGTTCAATCACACGAGATCGGTAGCTTTCCTTGTGGAGAATGTGATGAAATTTTAGAAACTAGGGTAGCTAGAATGTGTCACAGATCGAGAATACACAAGAAAGGCGTTAGATATACGTGTCCACATTGCCCCGAAGTTTTCACAACTTATTACGCGAGAGCGAAGCATTTAGTAGAGGGCCACGATCAACAGAAGCGGGAATACGAGTGCTTCACCTGTGGCAAATCCTTTGAGACAAGTTgcgaTGGTGTCACAAGGGAAATAACAGTAAAAATTGAATGGAAAAAAACTCGAAGAGCTACAGAGGATAAGGCGAATGCTGCCTTGATTCTCGAATATTCGAATGCTGTGGCCTTTAGGTGGATGCGCGGCAAATTTATGTGCGCTTACTGTCCTAAAATATGTGCAAATGTTAATGAAATACGTTCACATAGCCAAGCGCACGATAAGCTTATAATTTTCCAAAAACCAGAAGTCCGAAACTCGTTTCCACTTAGAATtgatataacaaatttaaaatgtagtttATGCGGCTTTAGTTGCAAGAGTTTAATGGATTTAAAAGACCATTTACAAACGGAACATGGCAAGAGTTTTAACTCTAAATATAGTGATGGTGTGATTCCTTTTGTTTTGACTACTTCGGAATATCGCTGTGTCCATTGCGACAACGTGTTCGAAGgctatatgaatttatttagtcACATGAACGAACATTATCAGAGTTTCGTTTGTTACACTTGTGGGAAAGGATATTCTGCAAAGCATAAGTTGAGAGCACATCAGAAATGTCACGAAACTGGAAAGATTGCTTGTCCGAAATGCGACCTTGTATTTGCAAATCATGTTGTCAAAAACAGACATGTCGCTTTAGCTCACGGTCCGAAAAAGCGATACCGTTGTCCCATTTGTGACTTAACCTTCAAATCTTGCCATTCAAGATTAAAGCACCTGGACAAAGTACATGGTCAAAAAAGGGAATATCGATGTAATATGTGCCCGTCTGTGTTTGGAAGTGGAACATCCCgAACGATCAAGACAATTAATCGGAAATGGAGTCACGGGTTATATAATGATCATAGAGATAATGCGGCACTTATAATCGAATTCTCTAACGCCCGTCCTTTCCGATGGAAACGCGGCGCTTTCGCTTGTTCTCACTGTCCGAAAACGTTCGGTAATTTTCAGGATGTTTCAAAACATGCACAGGAGCACAGTAACCGACTCGAGGCGATGAGATATGCTCGCCGATACGATACTCTAAAGATAGAAATTAGCGATCTAAAATGTGAAATATGCCAAGAAAGTATGAAGGGCCTGGACAACCTCAAAGAACATTTACTGAACATTCACCAAAAGCCAATCCATAAAGATTTAAGTTTGGGCGTAACGCCATTTATTCTACAGGACAAAGAAATGCTTTGCACGCATTGCGATGAACGTTTCTTGCTGTTTTCTAGACTGAACAGTCACATGAACCAACATTATCCAAATAATATCTGCTTTCACTGTGGGAAATCTTTTTCGGCCGTCCATCGGTTGAAAGCCCATCAGTTAACACACGAGGCTAATAAAGTGAAACATAAGTGCTCGAAATGCAATGAGGTATTCGATACCCGAGCGTTGAAGAATAAACATTTGAATACGAAACACGCTTCAGAGAACCGTCACAAATGTCCATTTTGCACTTTATCTTTTAAACGATATACGGAGAGGTTGAGGCATTTGAAACAAGTACACAATCAGAGCGTCGAATATCCTTGTCATTTGTGTTCGGCGGTTTTCGCTCTGTCCGACAAAAGAACTAAACACATAAGAAATGTTCATATAAAACACAAGCAATTTCAATGCGACTTTTGTCCGAGCAAATTCGTGACCGCGGGGCAGTTGAAAGATCACTTGGTGAAGCACTCTGGGCTTAGAGAACATCAGTGTACCGTTTGTAAAAAGAGCTACGCCAGGGCTAAGACGTTAAAAGAGCATATGAGGATACATAACAATGATAGACGATTTGTGTGCGAGTATTgGACAACCAAGACGGTTAATTGGAAAAGGCGACGCAGGTTCTATAACGATCATAGAGATAACGCGGCAATTATTATCGAATTCTCTAACGCCTGTCCTTTTCGATGGAAACGCGGCGCTTTCGCTTGTTCGCACTGTCCGAGAACGTTCGGTAATTTTCAGGATGTTTTCAACCATGCTCAAGAACATAGTAATCGTCTCGAAGCTATGAGATACGCTCGCCCGTACgataatgtaaaaatagaaaTCAGCAATTTAAAATGTGAATTATGTCAAGAAAGTATGAACGGCCTGGAGCACCTTAAAGAACATTTGTTAAACATTCACCAAAAGGcgattcataaagatttaagttTGGGCGTAACGCCATTCATTCTGCAGAATAAAGAAATGCTTTGTACGCATTGCGATGAAAGGTTTTCTTTGTTTTCTAGATTAAATAGCCACATGAATCAGCATTAtccaaataatatttgttttcactGCGGGAAATCTTTCTCTGCCGTCCATAGACTGAAAGCTCATCAGCTGACTCATGAATCCAACGAAACGGAGCACAAATGCTCGAAATGCGACGAAGTTTTCGAAACCCGAGCGTTGAAAAACTACCACATAAATACAAAACACGCGCCAGAGAACCGTTACAGATGTCCATATTGCAATTTATCGTTCAAACGATACTCAGATAGGTTAAGGCACTTAAAACAATTTCACAATCAAAGCGTCGAGTATCCTTGTCATCTGTGTTCAGCAGTTTTCGCCATGTCTGACCAAAGAACGAAACATATCAAAAATGTTCATATAAAACACAAGCAATTTCAATGTGACTTTTGTCCAAGTAAATTCGTGACAGCTGGCCAGTTGAAGAACCATTTGGTGAAGCACACTGGACTCAGAGAATTTCATTGTAGTGTTTGTAAAAAGAGCTATGCAAGAGCTAGGACTTTGAAGGAGCATATGAGGATACATAACAATGATAGACGATTTGTGTGCGAGTATTGTAATAACGCATTCATCCAAAAGTGCAGTCTAAAGAGCCATATGAGAACTCATCATCCTACCGCTGAACCCACTAAAATTGCTGTTTAG
Protein Sequence
MDSGRIDTSFLFLGERGKTENATAIKVESSEKLLLEDSLKVTEKKRYQRSARAEARFVTKKNATTILECWTLCPFRWKRNRFKCAYCEDNFTECSELRSHVRICSTQHSVKDIYSKFKEMSLINIDVTEASCRLCAMPFRGVNEMRYHVIEHGYDFDTSHPDGVLPFYLDKEAWKCVICQETFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHITGTFPCDKCRRVFTMRAARDYHKAHAHAKGPRYECPQCNMRFAGYYERMNHLNEAHREKEVSYKCAHCELSFKTSGKRAVHVRSVHFPQQRNFACPFCKWFFKTGYELKRHMVKHTGERNFCCTICGKTFQRNRALRTHLKTHEDLSCKWCGVLFKQKTLLLTHLRTNHPDISPAIADTQGVKVRRVRKLKENVCARQKRRRRRANNELPEESEKRIAKTMMRRNAMTLLECSTAWAFRWFQSSFFCSYCDAKFVDPLLLRDHVNSFHIADIPTNRVFSKLTENNMVKVDVSNVLCRMCNCKIESIDFLKKHLTTVHEKTFYQDYNDGILPFKLESNGFECQICCAHFTSFCKINEHMNTHYKNYICDACGKAFVSKSRFRTHVQSHEIGSFPCGECDEILETRVARMCHRSRIHKKGVRYTCPHCPEVFTTYYARAKHLVEGHDQQKREYECFTCGKSFETSCDGVTREITVKIEWKKTRRATEDKANAALILEYSNAVAFRWMRGKFMCAYCPKICANVNEIRSHSQAHDKLIIFQKPEVRNSFPLRIDITNLKCSLCGFSCKSLMDLKDHLQTEHGKSFNSKYSDGVIPFVLTTSEYRCVHCDNVFEGYMNLFSHMNEHYQSFVCYTCGKGYSAKHKLRAHQKCHETGKIACPKCDLVFANHVVKNRHVALAHGPKKRYRCPICDLTFKSCHSRLKHLDKVHGQKREYRCNMCPSVFGSGTSRTIKTINRKWSHGLYNDHRDNAALIIEFSNARPFRWKRGAFACSHCPKTFGNFQDVSKHAQEHSNRLEAMRYARRYDTLKIEISDLKCEICQESMKGLDNLKEHLLNIHQKPIHKDLSLGVTPFILQDKEMLCTHCDERFLLFSRLNSHMNQHYPNNICFHCGKSFSAVHRLKAHQLTHEANKVKHKCSKCNEVFDTRALKNKHLNTKHASENRHKCPFCTLSFKRYTERLRHLKQVHNQSVEYPCHLCSAVFALSDKRTKHIRNVHIKHKQFQCDFCPSKFVTAGQLKDHLVKHSGLREHQCTVCKKSYARAKTLKEHMRIHNNDRRFVCEYWTTKTVNWKRRRRFYNDHRDNAAIIIEFSNACPFRWKRGAFACSHCPRTFGNFQDVFNHAQEHSNRLEAMRYARPYDNVKIEISNLKCELCQESMNGLEHLKEHLLNIHQKAIHKDLSLGVTPFILQNKEMLCTHCDERFSLFSRLNSHMNQHYPNNICFHCGKSFSAVHRLKAHQLTHESNETEHKCSKCDEVFETRALKNYHINTKHAPENRYRCPYCNLSFKRYSDRLRHLKQFHNQSVEYPCHLCSAVFAMSDQRTKHIKNVHIKHKQFQCDFCPSKFVTAGQLKNHLVKHTGLREFHCSVCKKSYARARTLKEHMRIHNNDRRFVCEYCNNAFIQKCSLKSHMRTHHPTAEPTKIAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-