Hmis001944.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypolimnas misippus
Gene Symbol
Zfpm1
Assembly
GCA_008963455.1
Location
JBBEEQ010000002.1:6028577-6036054[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 0.022 1.9 9.9 2.1 3 23 143 163 141 163 0.96
2 40 0.0032 0.29 12.5 2.8 1 23 274 296 274 296 0.99
3 40 0.00024 0.021 16.0 0.9 1 23 302 325 302 325 0.96
4 40 0.029 2.5 9.5 4.8 1 23 330 353 330 353 0.94
5 40 3.5e-06 0.0003 21.8 0.2 2 23 494 515 493 515 0.97
6 40 0.0005 0.044 15.0 1.3 1 23 521 543 521 543 0.99
7 40 0.00015 0.014 16.6 0.1 2 23 550 572 550 572 0.96
8 40 0.0005 0.044 15.0 1.3 1 23 578 600 578 600 0.99
9 40 0.00015 0.014 16.6 0.1 2 23 607 629 607 629 0.96
10 40 0.0005 0.044 15.0 1.3 1 23 635 657 635 657 0.99
11 40 0.00015 0.014 16.6 0.1 2 23 664 686 664 686 0.96
12 40 0.0065 0.57 11.5 3.8 1 23 692 714 692 714 0.99
13 40 0.00015 0.014 16.6 0.1 2 23 721 743 721 743 0.96
14 40 0.0005 0.044 15.0 1.3 1 23 749 771 749 771 0.99
15 40 0.00015 0.014 16.6 0.1 2 23 778 800 778 800 0.96
16 40 0.0005 0.044 15.0 1.3 1 23 806 828 806 828 0.99
17 40 0.00015 0.014 16.6 0.1 2 23 835 857 835 857 0.96
18 40 0.0005 0.044 15.0 1.3 1 23 863 885 863 885 0.99
19 40 0.00015 0.014 16.6 0.1 2 23 892 914 892 914 0.96
20 40 0.0005 0.044 15.0 1.3 1 23 920 942 920 942 0.99
21 40 0.00015 0.014 16.6 0.1 2 23 949 971 949 971 0.96
22 40 0.0005 0.044 15.0 1.3 1 23 977 999 977 999 0.99
23 40 0.00015 0.014 16.6 0.1 2 23 1006 1028 1006 1028 0.96
24 40 0.0065 0.57 11.5 3.8 1 23 1034 1056 1034 1056 0.99
25 40 0.00015 0.014 16.6 0.1 2 23 1063 1085 1063 1085 0.96
26 40 0.0005 0.044 15.0 1.3 1 23 1091 1113 1091 1113 0.99
27 40 0.00015 0.014 16.6 0.1 2 23 1120 1142 1120 1142 0.96
28 40 0.0065 0.57 11.5 3.8 1 23 1148 1170 1148 1170 0.99
29 40 0.00015 0.014 16.6 0.1 2 23 1177 1199 1177 1199 0.96
30 40 0.0005 0.044 15.0 1.3 1 23 1205 1227 1205 1227 0.99
31 40 0.00015 0.014 16.6 0.1 2 23 1234 1256 1234 1256 0.96
32 40 0.0005 0.044 15.0 1.3 1 23 1262 1284 1262 1284 0.99
33 40 0.00015 0.014 16.6 0.1 2 23 1291 1313 1291 1313 0.96
34 40 0.0005 0.044 15.0 1.3 1 23 1319 1341 1319 1341 0.99
35 40 0.00015 0.014 16.6 0.1 2 23 1348 1370 1348 1370 0.96
36 40 0.0005 0.044 15.0 1.3 1 23 1376 1398 1376 1398 0.99
37 40 0.00015 0.014 16.6 0.1 2 23 1405 1427 1405 1427 0.96
38 40 0.0005 0.044 15.0 1.3 1 23 1433 1455 1433 1455 0.99
39 40 0.00015 0.014 16.6 0.1 2 23 1462 1484 1462 1484 0.96
40 40 0.0005 0.044 15.0 1.3 1 23 1490 1512 1490 1512 0.99

Sequence Information

Coding Sequence
atgaatgaaaatatgGTACCCGATGTTGATCCATTAAGCACATACAATTTAAGCACTTTTCACAATTTCGAAAGCTATGATAGTTTACAGTATGGACCAAACAATGGCCCCTATCCATATCCTGTAAAATTAGAACAATATCAAAatgcatataattattataataacactcCACACAGCAGCGACAATAAGCAGAACACACAGACAGTTGACAGTGCACCTAcgaataatgaaacaaaaaatatcagtGAGGACCAGCAAAcgcaaccaacttcaaatcctaacaataatttaaataccgaAAAACCAACAGAACTAGATATAAAACCAGATATGACTCATAATGTAAATAAGAGAAGAATCAAGAAGGAGAGAAGCAAATATTTCTCAGAGAAAATAACGGAGAAGGACTTCCCGTTCTACGGCTGTTCAGTGTGCAACATATGCTTCAAGTCGTTACACGAACTGGACACACATGTGACCGTGCACAAAGACAGAATAACGAGCTACGATTTGAGGATAAAGAATCAAATTAAGAAGAAGAAGttgaaaaaagaattaaagaaGAGTAAGAAAAAATTGAAGAACATCGTCAAATTGGAGAATGACATAGATATTGAAATCAAACCAGAAGACGGTTACATTGGCAATGAGAAGGCATCGGATTTACTTAACGCAGAATCTGATAACCAAAGTtcgaaagaaaatgaaaatggaaaGATTAATGATAAAGATGGAAAGACGACGAAAACAGAATTAAACGCGAAAATAACagataatgtaattaataaacagGAACTGATGAATTTACAAAAGATATACAAATGCTTCGCCTGTCAGAAGCAGTTCACTCTGagctattatttaaaacttcatgTCAGATCTCATACAGatgaAAAGCCCTACACGTGTGCACAATGCGGCCAGTCTTTCATAACAGCGAGCAAGCTGGGTCGTCACAATAAGAGGTTCCACCTCGCGATAAGATACCAATGCCGGAtatgttatagatttttttcaagATTCGAATTCCTTACCCGTCATTTCGACAAGAAACATCCCGATGACAAATTGGAAGGAGAACCGTATGATTACAACGCAATACTGCCATATTTGAAAGAGCTAGAAGAACAACTACAAGAGAAGACAGAAAGTGAAAAGGCTAAGCCGAAACCCGAGGAGATGTGGTCTAGCGACTGGCCGAATATGGGGACAAGTGACGTCAGAGATGTCAAAGAGAACGTCGTCAAAGAGGAGGAGAAAGTGGAATTGAAAATCGAAGAAGTGAAAGTCGATATGGACGAAGATGTGGTTGATGTGAAACAGGAGGCCGAGTTAGAGGATAAACCTGAGGATGTAGACGACTTTAAGGATGATTTGAAGGATGAAAACGAGTCGGACGACGACTACTTCCCGTCCAACACGTGGGCGGCGtccccgcccgcgccgccgtcGCCCGGCCCGCGCGCCGACCGCCTGCAGTGCGGCGAGTGCGGCAAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCCACACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCCACACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCCACACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTGGGACGGTGAGTGTGAGAGCGAGTGCGGCGAGCGCGTCAGCAGCGCCTCCTACCTGCGCGTGCACCTGCGCACGCACAGCGGCGAGCGCCCGTACCGCTGCTTCGTGTGCGGCGCGGGGTTCATCACGTCCAGCAAGATGCACCGCCACGTGCTCACGCACCCCGAGTGCTAG
Protein Sequence
MNENMVPDVDPLSTYNLSTFHNFESYDSLQYGPNNGPYPYPVKLEQYQNAYNYYNNTPHSSDNKQNTQTVDSAPTNNETKNISEDQQTQPTSNPNNNLNTEKPTELDIKPDMTHNVNKRRIKKERSKYFSEKITEKDFPFYGCSVCNICFKSLHELDTHVTVHKDRITSYDLRIKNQIKKKKLKKELKKSKKKLKNIVKLENDIDIEIKPEDGYIGNEKASDLLNAESDNQSSKENENGKINDKDGKTTKTELNAKITDNVINKQELMNLQKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAQCGQSFITASKLGRHNKRFHLAIRYQCRICYRFFSRFEFLTRHFDKKHPDDKLEGEPYDYNAILPYLKELEEQLQEKTESEKAKPKPEEMWSSDWPNMGTSDVRDVKENVVKEEEKVELKIEEVKVDMDEDVVDVKQEAELEDKPEDVDDFKDDLKDENESDDDYFPSNTWAASPPAPPSPGPRADRLQCGECGKRVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFHTSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFHTSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFHTSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPECWDGECESECGERVSSASYLRVHLRTHSGERPYRCFVCGAGFITSSKMHRHVLTHPEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-