Hmis006402.2
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- -
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000007.1:7484139-7485503[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-09 5e-07 30.1 0.1 4 33 16 45 15 48 0.95 2 2 5.5 2.5e+03 -1.0 0.0 29 41 49 62 49 65 0.85
Sequence Information
- Coding Sequence
- ATGGAACATTCCATTAAAAGAAGTCGGGGTCTATGGACACTTCAACAGCTGGAGGCAGCTATGGCTGCTGTCAAAGACGGAGTCATGTCTCAACGTGCTGCTGCTAAACATTACTCTATACCTAGAAGAACATTGACTGACAATCCACAATCAACCCTTGGTTTTAGCTCAAAAAGAGTGCACATGGTCGCACAAGAACACGCTGAAAACGTTCCGATAGCCGCTTGTGTAAATGCATTGGGTAACGCATTTCCCCCAATGATACTATTTAAGGGGAAAAGGATGAAGCCCAAGTACAACGACAATTTGCCTTCAGGATCGTTGATGAAAATGGCAGCAAAAGGAAGCATGACCACGTCACTATTTGTTGACTTCATCCATCACCTGGGTCCATCAAGTATTAACAAAAGTCACACAAAACTAAGACCTCAGCCTGATAGTTCTGATTCAGATGCCACTTTATGTGAGAATCAAAGTCCTAGCTCTCCATCCTTATTGCAACCGGATTTCTCTTAG
- Protein Sequence
- MEHSIKRSRGLWTLQQLEAAMAAVKDGVMSQRAAAKHYSIPRRTLTDNPQSTLGFSSKRVHMVAQEHAENVPIAACVNALGNAFPPMILFKGKRMKPKYNDNLPSGSLMKMAAKGSMTTSLFVDFIHHLGPSSINKSHTKLRPQPDSSDSDATLCENQSPSSPSLLQPDFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -