Hmis013900.2
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- -
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000016.1:10072745-10074592[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-12 5.5e-10 39.6 0.0 3 39 16 52 14 54 0.93
Sequence Information
- Coding Sequence
- ATGGCGGCACCTAAGTCAAGCGCAAAACGGAAGGAATGGAATACAGATCATATGGCGGAAGCTATTAAAATGGTCCGAGAGAAAAAAATGGGCTATTTAAAAGCTGCAAAGCATTTTGATGTCCCTAGGACTACTTTGTTCCGTTTATATCAGCAAAATGAGCTACCTCCAGAAGAAGCCGCAGCTACTACATTGGGAAGAAAAACTGTCTTAGGTGTTCATATTGAAAGTCTTTTagtggaatatattttaaagatggaGAGCAAGTTTTATGGCTCAACGAGAAATGATGTTCGCAGAATGGCATATATGTTAGCTAAACGTAATTATTTGAAGAATCCGTTTAATGAGTCTGGGATGGCGGGAAAAAAATGGCTCaagctatttttaaaacgtCACAAAGAAAAACTATCACTGAGAAGACCAACTGGTACGTCATTTGCAAGAGCCTTTGGATTTAGCAAAGAAAAAGTGGATTCCTTTTTTGATCTCCTTGAAGACGTCTATGATAAAGGTAAATATCCTCCTAATCGAATTTATAACGTCGACGAATCAGGACTTACAGTTGTTCAAAGCAAGATACCCCAAATTGTTGGGCACAAAGGTAAACGACAGATAGCTGCACTTACCTCAGCTGAAAGAGGATCATTAATGACGATAGTCTTTAGTATGAACGCCACTGGACATTTTGTACCACCTTTTATTATATTCCCTCGTAAAAATATGAGCCAACAATTAATGAGAGGCTGTCCTCCAGGTTCTGTTGGAGTTACACATCCATCAGGGTGGatacaaatgaatattttcacCGATtggtttaaacattttattaaacatactaACCCGACACCAGaatcaaaagtattattaatctTAGACGGTCACTTTACTCATACTCGAAATATCGATGTGATAGAACTAGCAAGAGAAAATAACGTAGAAATTGTATCCATACCTCCACACACAACTCACAAACTTCAACCACTAGATAAGACTTTTATGGGACCACTCAAAACATATTACAGTGAAGAAATAAGAATGTGGATCCGGAATAATGAAAGGCCATTAGGTCCTTTTGACACAGTCGAGCTTTTTGGCAGGGCATACTTAAAAGTTCAAACAGGTGAGGTTGCTGCTAATGGGTTTCGTGCTACTGGACTGTggccattaaataaaaatatatttactgaaGTTGACTATCTTGGTGCACAACAAAATGCAGTTAAAGACGGCTGTACTGTCAATGTTACGCCCACAAAATCAATTTCACCGTCAAATGAACAGCCAATGCCTAATGCAAGATCCCTTGATAACAGTTCGACTGAAGAATTAGCAGCCAAGCAAAATACAGATCAAGATCCAGAACCAGCACCTTCCACTTCAGGCCTTTCTCGCAGCagtcttaatttattatctccATATGATATCAGCCCAGTGCCAAACAAAAAGAGAATAACGAGTAAAAGGGGAAGAAAATGCTCTGTTGCATCCATTATCACGTCTTCGCCATATAAAAATGATCTCATAGACCAACGAAACAAGAAAACTCAAAaagaaaaccaaattactaaagctaaaaataaaaaagaaaacaaaaacaaattaaaaagaaaacctcTGAAAGAGACAGATTCTTCTGTCGATGACGACACTGACAGTGAACCCGAAGGATTGGAGAAGCGTACGGCTCCAGACACCGAAGATGCAGAGTGCATGTTTTGCCATATGCTTTTCTCTAATGACACTCAAGGGGAAACCTGGATCAAATGCCTCATGTGCGGCCTCTGGGCACATAATGAATGTGCTGGTGCTGAGTTTGACACCTGGATTTGCGACTTctgcaaataa
- Protein Sequence
- MAAPKSSAKRKEWNTDHMAEAIKMVREKKMGYLKAAKHFDVPRTTLFRLYQQNELPPEEAAATTLGRKTVLGVHIESLLVEYILKMESKFYGSTRNDVRRMAYMLAKRNYLKNPFNESGMAGKKWLKLFLKRHKEKLSLRRPTGTSFARAFGFSKEKVDSFFDLLEDVYDKGKYPPNRIYNVDESGLTVVQSKIPQIVGHKGKRQIAALTSAERGSLMTIVFSMNATGHFVPPFIIFPRKNMSQQLMRGCPPGSVGVTHPSGWIQMNIFTDWFKHFIKHTNPTPESKVLLILDGHFTHTRNIDVIELARENNVEIVSIPPHTTHKLQPLDKTFMGPLKTYYSEEIRMWIRNNERPLGPFDTVELFGRAYLKVQTGEVAANGFRATGLWPLNKNIFTEVDYLGAQQNAVKDGCTVNVTPTKSISPSNEQPMPNARSLDNSSTEELAAKQNTDQDPEPAPSTSGLSRSSLNLLSPYDISPVPNKKRITSKRGRKCSVASIITSSPYKNDLIDQRNKKTQKENQITKAKNKKENKNKLKRKPLKETDSSVDDDTDSEPEGLEKRTAPDTEDAECMFCHMLFSNDTQGETWIKCLMCGLWAHNECAGAEFDTWICDFCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824648;
- 90% Identity
- iTF_00824648;
- 80% Identity
- -