Hmis000743.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypolimnas misippus
Gene Symbol
JARID2
Assembly
GCA_008963455.1
Location
JBBEEQ010000001.1:11609655-11615138[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.7e-12 1.3e-08 35.8 0.0 7 89 443 528 439 528 0.86

Sequence Information

Coding Sequence
ATGCTAAATTGTTTGGTCGCGTCGCTGTTAGAAAACCGCTACTTCGAccacaaaacaaaaagaaacggATGCAGTGGGCCCTTAACCATCGAGACTGGACTGAAGAAGACTTTACTGCAGCAAAATGCCGTGCCATCTGGGTTAAGATTGATTGGAAatggatttatttttcaacaacaTAATGATCCAAAACATAGTTCGAAATTATGCCGGGAATGTTTGGaacgaaaagaaaaagaaggagTGTTAAAAAATATGGTGTGGCCTCCACAGAGCCCAGATCTCAATCCAATTGAGCTGTTGTGGGAAGAACTAGACAGAAATGTTCGCGGTCGTTGTCCATCCTCTCAAGATGAAATGTGGAATGCGTTACAAGAAAGCTGGAACAATATTTCGCAAGATGCAATCGACAAATTGATTGCTCATATGCCCAGGCTGGAATCATATGATAAAAAGAAACAAGTGGCCGATTGGGTTGATAAAACTCGAACGTCGTGTCGACAACGTCGATCAAGTACAAATAGTGAAAGTGGcgacagaaaatattttaaggtgcCCAAACTTCCAGCACGAGATAATAGAGATAAATATGTTACACACGGCACTTCAGTGAACTTTGATGTGCAGTCTGAAGCAGGATCTGAAAGATCTACTAACACATTAATACACATTACTGAAACCTGTCGGTTCTGCTCAACTATCATAAAACATTTAAGGTTATATCACAAAACTAAGAATCATGATGGATCACTCAAGCTACCATCAGGTTTGCAAATACCTTGGGTGAATAAAAACATTCTAACACTACTAAATGCCCTAGAAAAAGGGCAGCTAGAACCGTGTCTTGCATCTATACAAAAGGAAACTAATGCTAAGTCAAAAAATCCTGTTAGAGGATCAAATAAAAATTCGGATGACGGAGCGGTTGCCGGACCATCGAGTCGCATTGATAATTTTGGCACAAGAGTGTCGCCCGCACGTCCGGCTCCGAAACGAAAAGAAAGGAAAACGATGAGAGTAACTAGACGAATGGGAAAAGCTATGAAAAATGATAACAACGAACCTTTTCCTAAAATTGGTAAACATGCGGATGTAGGCAAAATAGTTGAAGCGCCAAAATTCACTCCAACAGAAGAAGAATTTAAAgaTCCAATAGCatatttccaaaaaataatGCCCGAGGCGGCTAAACATGGAATATGTAAAGTAATAGCTCCAGCAGGATTCCAGCCTACTTGCACGTTGACGGATACGATTCGATTTACAGTGACAAATCAGTATTTGGCACGTTTTTATAGTCGATGGGGTCCGGTGACTCGAGAGTTATGTGCTCTGCGCGCCCATTTGTTATCACAGAGCATTTCCTACACTCATGCTCCTCTTttggatGGCTTGGAAGTTAATATACCTAAAATGATTCGATTTGTACAACGACAAGGTGGGCTTAAATCGAGCGTTAAATGTAGAACATACGTGGATACCCGACAATGGAACAGATTCGCAGAGGAAGCGAATTACACACAATTAAATAATCCGGCCAGTAAGCTGGACCACATATACATGAAATATTTGATACCTTACGACGCTCTTACTCAAAAGCAACGCCAAAACAAGGCGGAAAAAATGGACAGACTATGGTCGAAAAGAAacgataaattaatacaaagagCGCAAAATCCGCTTCATCGACAAAAGAGATTGTTGGGGGAGTCTGACTCTTCAGAAGACGAAGAGTACAAAGAAGACGCGCACGAGGCCGCGGCGCTAAACGAAGCCGAGGAGTGTGTAGTTCGCGGAAGAATCATGAAtatcagtaattttaaaaagatatcCGCTAACGCCATGAAGATATATTCCCCAACTGAAAGGTCGACTGCTGATATCGAGGCGCAGTATTGGAGGTTCGTGCTGCTAGGCAATGAACACGTGTGTGTCAACACCGCGTCGATAGATACCGGAAGTGAGGGTTATGGATTTTCCAGCAAAAAAAGCGATCCCTACGGCAGACACCCTTGGAATTTGAAGACGTTCATCCAGAACCCTGGCAATGTGCTGCGTTTGCTCGGGCCGGTGCTCGGAGTGACGGTGCCCACGCTGCACGTCGGCATGATCTTCTCGACCAGCTGCTGGCACCGCGACCCACATAGCCTGCCGTGGATAGAGTACATGCACACTGGTCCCAGTAAAATATGGTATGGCATTCCAGACTCCGAAAGCACCAAATTCCGGCGTGCAGTAGAGACTCTTTGCCCAAGTGCTTGTCAGAACAAATCAATTTGGCTGCCATCGGACATTACTATGATTCCACCAACTTTGCTGCTGGAAAAAAATGTCTCGATGTCACGACTCGAACAAAAACCCGGCGAATATGTAATTGTCTTTCCAAAGGCTTACTCCTGCTCTATCTCAACTGGTTACACAGTTTCTGAGAGTGTGTATTTCGCAACTAACAACTGGGTTAAATCTGTCAACAATGTTTTCCAAGAATTGCGTCAAAGCTGTGAACCAACGATGTTCCCGCTGGAGAAGCTGCTGATCGCCATCGCCCGCGATCCCAAAGCCCCGCTCACCGTGCTGCAGATGGTGCACGAGTGCTTCTCCGCTATACTCTCGGAGGAACTTGAAAACCGACATCAGCTCGAAAGGCACGGGCTTAAGcctATCACCTACGACTACGAAGAACAAAGCAATGCAGGTGATTGGAACCAGCATGAGAATGAATGTGAAATTTGTCGGTCCACTTTGTACTTATCTCggGTGAAAAACGTCTTTCGCAGAACATATTCCGTGTGCCTCCGGCACGCTTTACAAGTACTAGACACCAAGAACAAGAAGACCGCAAGGCGTGATATTGAAACATTCGAACTGGAGTATTTCTTTCCAAACGCTGAATTGGAAGAAGTGATAGCTAACGTAATTAAACGTTTGACAAGAGCAATTTAG
Protein Sequence
MLNCLVASLLENRYFDHKTKRNGCSGPLTIETGLKKTLLQQNAVPSGLRLIGNGFIFQQHNDPKHSSKLCRECLERKEKEGVLKNMVWPPQSPDLNPIELLWEELDRNVRGRCPSSQDEMWNALQESWNNISQDAIDKLIAHMPRLESYDKKKQVADWVDKTRTSCRQRRSSTNSESGDRKYFKVPKLPARDNRDKYVTHGTSVNFDVQSEAGSERSTNTLIHITETCRFCSTIIKHLRLYHKTKNHDGSLKLPSGLQIPWVNKNILTLLNALEKGQLEPCLASIQKETNAKSKNPVRGSNKNSDDGAVAGPSSRIDNFGTRVSPARPAPKRKERKTMRVTRRMGKAMKNDNNEPFPKIGKHADVGKIVEAPKFTPTEEEFKDPIAYFQKIMPEAAKHGICKVIAPAGFQPTCTLTDTIRFTVTNQYLARFYSRWGPVTRELCALRAHLLSQSISYTHAPLLDGLEVNIPKMIRFVQRQGGLKSSVKCRTYVDTRQWNRFAEEANYTQLNNPASKLDHIYMKYLIPYDALTQKQRQNKAEKMDRLWSKRNDKLIQRAQNPLHRQKRLLGESDSSEDEEYKEDAHEAAALNEAEECVVRGRIMNISNFKKISANAMKIYSPTERSTADIEAQYWRFVLLGNEHVCVNTASIDTGSEGYGFSSKKSDPYGRHPWNLKTFIQNPGNVLRLLGPVLGVTVPTLHVGMIFSTSCWHRDPHSLPWIEYMHTGPSKIWYGIPDSESTKFRRAVETLCPSACQNKSIWLPSDITMIPPTLLLEKNVSMSRLEQKPGEYVIVFPKAYSCSISTGYTVSESVYFATNNWVKSVNNVFQELRQSCEPTMFPLEKLLIAIARDPKAPLTVLQMVHECFSAILSEELENRHQLERHGLKPITYDYEEQSNAGDWNQHENECEICRSTLYLSRVKNVFRRTYSVCLRHALQVLDTKNKKTARRDIETFELEYFFPNAELEEVIANVIKRLTRAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-