Hcun003597.1
Basic Information
- Insect
- Hyphantria cunea
- Gene Symbol
- -
- Assembly
- GCA_003709505.1
- Location
- PKRV01000095.1:200210-221926[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.4 5.9e+02 1.3 1.2 1 21 170 190 170 192 0.68 2 17 7.3 4.5e+02 1.7 0.5 3 10 229 236 228 240 0.88 3 17 3.2 2e+02 2.8 3.5 3 23 251 274 249 274 0.81 4 17 0.19 12 6.6 0.9 3 23 292 313 290 313 0.94 5 17 0.01 0.65 10.6 0.7 2 20 351 369 350 371 0.95 6 17 5 3.1e+02 2.2 2.7 2 23 377 398 376 398 0.91 7 17 0.74 46 4.8 1.8 1 23 630 651 630 651 0.96 8 17 1.5 91 3.9 3.0 1 23 662 684 662 684 0.92 9 17 0.00086 0.054 14.0 0.2 2 23 690 711 689 711 0.96 10 17 7.1 4.5e+02 1.7 0.4 1 19 733 750 733 754 0.73 11 17 0.00037 0.023 15.2 1.4 3 23 797 817 797 817 0.97 12 17 3e-05 0.0019 18.6 2.6 2 23 833 854 832 854 0.97 13 17 2.2e-07 1.4e-05 25.3 3.2 1 23 860 882 860 882 0.98 14 17 0.00018 0.011 16.2 0.9 1 23 887 909 887 909 0.97 15 17 3 1.8e+02 2.9 0.8 6 23 920 938 916 938 0.92 16 17 0.026 1.6 9.4 0.7 1 19 945 963 945 964 0.85 17 17 5.8e-05 0.0036 17.7 1.3 3 23 977 998 975 998 0.96
Sequence Information
- Coding Sequence
- ATGCCAAAACCACAACAAACATTCGACGACTTTGAAGCTCTTATTGATTCACAGAAGAAAGAAGCTATACCGTCAGAATTAAAATTCTCCGTCACAGTAGCAGTTGAAGAGTTTGATGAGGAAAGCTCAGATCTAATTATCGTAGAAACTAATGAACAGGCTCCCGTTGAAGTAATATCTTCAGATTCCGAAATAGATGTCACGATTGGAGAAAAAGACCCCAAAAGCAAACTGTCTGAGAACGTCATTGAATTTCCTGACAAGTATCAGGCAGAAGTAGTTTTAGATAGATATACGATACTCGATGCTGCAAGCGAAATATTGAACAATCCAGAGAATATAGCTGATGAAATACTCGGTATTGAAGTTAGAAACTGTATAGGTCAATATCGGACAAGTTTCGTCGATAAATTCGAAGCTAAAATTCAAAGTGTCTTCCTTAAATGGTTTAAATGGCAGAAATCAGTTACaagttcaaaaaaaaagttcagaCTTTCGCCTTTATTCTACAAATGTTATATTTGTAGGAAATCTTGGTGGTATTTTCAAGATTTTCGAGAACATTTGAAAGGGCATAATGATTTCAAGCTTGATTTAGAAGAATACACAGTGCATGAAGCGAATATCGTTGCTTATTTTAGTGGTGATACTATTATCGAAGCGGATTTTTATACTGAAGGCGATTGTCCAAAGTGCGGTTACGATTTTGACGCTCACAAATCGTCTACAAGAAAAGATTCcacatacatttgtaaaatagatTGTTGCAATCGGATATTTTTCACGTGTTCTGGTTTGAAAACACACGAATACGTGTTCCACGCTGCTTCAAATTTAAGCGACGATTTACTAGAAGGTGGAAAACAAATGATCTGCAAAGCATGCAGTTTCAACTTTTATTCACAGCAGTCATATCAATCTCATTTGAATTTGATGCACACGGTTCGTTCAGATTTGGTTGCTCCAGTGAGTTTGAATAAGTGTCCTTTGTGTAATGAAAATTTTTTATTAGGAGTCTACCATGTTTGTACGGAGAAGAAGATTAGGAAACAGTGTACGTTGTGCTATAGGAGTTTTCAGAGACACGGTCAGTATATAGCCCATATGACTGGCCAAAATGGACTGTGCAAATGCCGGATTTGTGATGAAGTGTTGCCAAGACAGTGTCTGGAAACGGAACACCTCATGAAACATACGGATAAATTTGTGATTGTGAAGAAATGCTTGATGTGTAAAGATTTTACAGTGTTTTTAGATTATCAGACTGCTTTTGATCATGTGTCTGTGCATTTGAACATGCTGTTTGAAGGAAGCaactataagtatataagtaaaattttaaTCCCAAAATCGTGTCTACTACAGCGTTTGGAACTAAAAATGGAAATCAAAGAAGAACTGAATGATGTCATCATAACTCCCGAATTGAAAATGGAACAAGAGAATGATGATTTTGAAACTGACGCTGGTGACGAAACTAAAATACTAATCAAAGAAGAAATAGACATTCACGAAGATTTCGAATCGGTGCACTTGAAACAAGAACTAGAGCAAAAAGCAGAGACAACATCTGATATTTCCAGAATATTCGGTATAAAAATGGAAGCGAACGATATGAAGCAAGACGTGCAAGTAGACGAAGAATCAGAATACGAAgacgatataataaaattagactTCAGTTTCTTGGATACAATGCAAGAATCCGTTGAATATTCAACGCAAGattctataataaaagtagAAGAAAAGACAGAGGGATTGCAAGAAGCTACAGACGTAATACAAGAAGACGAAGATACGCAAGACTGTGAAGGATATCAAGATGATGCAGAAGATATTCTTGAAAAAAATGACAAcggcaaacaaaataaaatacctaaaatttatAGTTGCGGACGATGTGGATTTGATGCTACCCACAGGGAATTTAGAGCTCATATGAAATCGCATTGCACCGAAAAAGTTTATGAAACTAAAGTTTATACGTGTACAAGATGCTCGACCAATTTTGACCAGTTCAATAAGTTTATAGACCATTTTACTGAGCATAATCTCAGCCCGTTATCATGTCCCGAATGTTTTAAACTCTTCAAATCGTACAATGCTTTAGAAATTCATATAGAGAAGCATATAAGAATGACTTATGTGGGACTTAGAACTGCCTCAGGGTCTAAGAAGCAAAtgaatttctattataaatgtaaacttTGCGAGGAGACCATTGAGAAGGTGGACTTCTTTCAGCATTGGGTTGGGCATTTGACGTTCATTGAGAAGGCAGAAGATGTTCATGTGTTAGACAGTAATAGAATTAATCAGGAAATGCTAACAGAATTGTTAGagcGGCTACAATCTCCACTCCCAGTTTTCAATTTAAGACGGGGCTGTCCGATTTGTGTTAGACATTTCGAACGAAAAAGTGATTACAAACGACACTTGATTGAACATCTCCTTAGCCATGCTTATTCACTgcattatttatacaaacaattaaAGTGTCAAATTTGTGGAGAAAGCTTCTGTAAGGGAGatgattataaaaaacatatgcGCAATCATGGCGATCTACCCGATCACAAATGTGAGATTTGCGATAAGTTTTTCAGCGATTCCAGTAATTACACGAAACATATTAAAGTTCACAATAAAAGTGCTTATACGTGtgatatttgtaaaaagaaatttcaagCGAAATTTTCGCTGGAAAAGCATATTGTGATTCACAAAAACCAGAAACCAATATTCTGTGTGCCATGTAACAAGACGTTCTTCTTAGAGTCCATTTATAAGAAACATATCAAAATGACTCACTCTAAAGAGGAGCAAACCTTCgcctgtaaaatatgtaaaaaacgaTTTAAAAGGATTAAAGACAAGTGGGACCATTTATGGGACGTTCACAAAGAACGCAACAAGAAGATTGATTGCCTAAAATGTTCTAAATCCTTCAGAAAGTTCAGCGATTTGAAGATGCACATGAAAGTCGATCATTTGATGTTTTTAACTAACTCTAAGacacaaaacaaaaaccgaAGGAGGTCCTAA
- Protein Sequence
- MPKPQQTFDDFEALIDSQKKEAIPSELKFSVTVAVEEFDEESSDLIIVETNEQAPVEVISSDSEIDVTIGEKDPKSKLSENVIEFPDKYQAEVVLDRYTILDAASEILNNPENIADEILGIEVRNCIGQYRTSFVDKFEAKIQSVFLKWFKWQKSVTSSKKKFRLSPLFYKCYICRKSWWYFQDFREHLKGHNDFKLDLEEYTVHEANIVAYFSGDTIIEADFYTEGDCPKCGYDFDAHKSSTRKDSTYICKIDCCNRIFFTCSGLKTHEYVFHAASNLSDDLLEGGKQMICKACSFNFYSQQSYQSHLNLMHTVRSDLVAPVSLNKCPLCNENFLLGVYHVCTEKKIRKQCTLCYRSFQRHGQYIAHMTGQNGLCKCRICDEVLPRQCLETEHLMKHTDKFVIVKKCLMCKDFTVFLDYQTAFDHVSVHLNMLFEGSNYKYISKILIPKSCLLQRLELKMEIKEELNDVIITPELKMEQENDDFETDAGDETKILIKEEIDIHEDFESVHLKQELEQKAETTSDISRIFGIKMEANDMKQDVQVDEESEYEDDIIKLDFSFLDTMQESVEYSTQDSIIKVEEKTEGLQEATDVIQEDEDTQDCEGYQDDAEDILEKNDNGKQNKIPKIYSCGRCGFDATHREFRAHMKSHCTEKVYETKVYTCTRCSTNFDQFNKFIDHFTEHNLSPLSCPECFKLFKSYNALEIHIEKHIRMTYVGLRTASGSKKQMNFYYKCKLCEETIEKVDFFQHWVGHLTFIEKAEDVHVLDSNRINQEMLTELLERLQSPLPVFNLRRGCPICVRHFERKSDYKRHLIEHLLSHAYSLHYLYKQLKCQICGESFCKGDDYKKHMRNHGDLPDHKCEICDKFFSDSSNYTKHIKVHNKSAYTCDICKKKFQAKFSLEKHIVIHKNQKPIFCVPCNKTFFLESIYKKHIKMTHSKEEQTFACKICKKRFKRIKDKWDHLWDVHKERNKKIDCLKCSKSFRKFSDLKMHMKVDHLMFLTNSKTQNKNRRRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -