Hcun013226.1
Basic Information
- Insect
- Hyphantria cunea
- Gene Symbol
- -
- Assembly
- GCA_003709505.1
- Location
- PKRV01000076.1:364144-373215[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00064 0.04 14.4 0.4 1 23 380 402 380 402 0.97 2 10 0.13 8.3 7.2 0.2 2 23 410 432 409 432 0.94 3 10 0.00073 0.046 14.3 0.6 1 23 436 458 436 458 0.97 4 10 8.1 5e+02 1.5 0.1 1 23 463 486 463 486 0.92 5 10 0.25 16 6.3 0.1 1 22 525 546 525 550 0.92 6 10 0.0055 0.34 11.5 0.6 2 23 569 591 569 591 0.95 7 10 0.00081 0.051 14.1 2.2 2 23 644 665 644 665 0.97 8 10 0.00057 0.035 14.6 0.1 2 23 671 692 670 692 0.97 9 10 1e-05 0.00063 20.1 2.8 1 23 698 720 698 720 0.98 10 10 2.4e-06 0.00015 22.1 1.6 1 23 726 749 726 749 0.98
Sequence Information
- Coding Sequence
- ATGGTGTCGTATTGTTGTGTAAAAGGTTGTAGTAACAATAGCAAGCAGAAGAAGAAAGATCTCaataatttgatttcatttcacgcTTTTCCATGCAACCAAGATCTCAAAACAAAATGGTTAAAAGCCATAGGACGTCCAAATTGGGTACCTCCGAGTCACGTCCGTATATGTAGCGCTCATTTCAACCACGATCAGATCAACTTTGAAGGATGCCGAATAAGAATTAAAGATGATGCTACACCTATAAATAGTTTACCTGTAAACTCCAATTTTGAAGCATCAAATGTAGAAGTATGCAGAATTTGCCTAGCAACTGATATGAAGTTGTACAGCATAGGAGGCAATAACTTAAGTAGCTGCCTGCCTTGTCTGGACAATGTCATTGGATTCAATGAAATATACAATATAGAAGGTCTACCGCAGTATGTTTGTTACCAATGTGCTGCCTGTTTGATGAAATATAACCGTCTTGTAGAGAAAAGTATGATAGCTCAAGCGACACTTCTAGATATTTTTGCTAAAAACGGTCAGATATCCAAAAGTCTAATAAAACAgcaaaatagaaataaactaaatttaaattcctCACTAAATAGTTACACaagtaaagattattattattacaaccatgatgatgaaaagaaaagtttacaGAAAGTGTCTTTGGATTGtactgataattatttaaaagacgaAAGTTATGATGAGGAACTGCAATCTGAGTTTAAAACAGTAAACTGTGGTAATTTACAAGCCTTGGTCTCTGTATCTGTGCTCAGTCTGAGCACAGATACAGAGACCAAGGCTTGTAAAACAGAGataaacgaaaatataataaatgaagaaataaatcatttacatGGCAGCCATTTAGATTCATATTTAGTCAGTCCAAGCGCGAATTCTGTATCTGATAGTGAACATTATGAAATTGAAGAAAACACacaagataaaattataaagaagGGAACTAAGTATGAAGACAGACCAGTTAAAAGAAAGAATGCCGATGGTCTTACACCAGACGAAACAGATATGCAGACATATTTTGACGTGGTGAAACTGTCGTTACAGGAACAAATAGAAGAATGGAAAAGAACAGCAGCAAAAAGACCTCTGATGAGTGAAACTGTGCATGAATGTGAAGTGTGTTCCAAAGTATTCGCTCAAGTTAATAGTTACCGCATCCATCTCGCCAGTCACGATGCAGCCCGAGGTAAGGTTGAGTGTCAAGTCTGCAAACTACGCTTCAAAAACGATGTCCTTGCCAAATCGCACGTCAACCGAGCTCACGCCAAGAAGTTCTACTGCAAGACGTGTCCGAAGGTGTTCAATAAtgtGGGGGTAGCTAAGAAGCACCAGCGTTGGCACGCAGGCTTCAGGTACGCGTGCGGGTGGTGCTCGTTCAGCACGCTTCACGAATCTGCGCTGGGCGAGCACGCGAGACGTGCGCACGCGCACTCGCACACGTGCGCCACGTGCGCGCGCGCCTGCCTCAGCCGCCGCGGCCTGCGCCTGCACGCGGCCACGGCACATCCAGACGTTGAGaATACAGATGTCACGGAAGCGTATCGATGCGATGCATGTGATATCAACTTCGTGTCGGAAGGAGCCCGGCGAATACATTTATTGACTTCAGTACAACATAGGAAAAAATCTAATCTTTGtgacCCTTCAAGCCAGTCATCGGAGCTCCGCAATACATGCAGTAAGTGCGGTATCGAATGTTCGTCGTTCAGTGAATTAGTGTCACACGCAAGGGCGGAACACCCACGTGTCAACAGAAAGAAATGGCGGGCACATGACAGCTATCCTACCCAGTGTGAACTTtgtgATGAAACAGTAACATGCCGACGGAAGCACTGGCACCACGTGCGAAGACAGCATCCGAAGGAGATCGATACTTACCGTCCTATCGTCACGGCTGTATGTGATACTTGTGGGAAAGGGTTTCAAAATTCAACTAAACTCCATCTGCATCAACTACGGCATCGTGCGCCTACAGTTCGATGCGATACATGTCCTCGtttgttttatgataaatatgcTTTGGCTCGACACGCGATTACACATAAGACAAACAAACCACATCAATGTCGCACTTGCGGAAGAGCTTTCAAATTACGAAGCAATCTAGAGCGGCATTCGCGGGTACACTCGGATATTACTCCTTATGAATGCACAATGTGtaacaagaaatttaaatactCGTCAAGCGTAAATTTGCACATTCGTACTGTGCACTATAAACTACCGCATCCACCTAGAAAGAAGAGAAACAAATTGGCCAAAACTAGTGCAAGCGGTAATACAAACTTGtag
- Protein Sequence
- MVSYCCVKGCSNNSKQKKKDLNNLISFHAFPCNQDLKTKWLKAIGRPNWVPPSHVRICSAHFNHDQINFEGCRIRIKDDATPINSLPVNSNFEASNVEVCRICLATDMKLYSIGGNNLSSCLPCLDNVIGFNEIYNIEGLPQYVCYQCAACLMKYNRLVEKSMIAQATLLDIFAKNGQISKSLIKQQNRNKLNLNSSLNSYTSKDYYYYNHDDEKKSLQKVSLDCTDNYLKDESYDEELQSEFKTVNCGNLQALVSVSVLSLSTDTETKACKTEINENIINEEINHLHGSHLDSYLVSPSANSVSDSEHYEIEENTQDKIIKKGTKYEDRPVKRKNADGLTPDETDMQTYFDVVKLSLQEQIEEWKRTAAKRPLMSETVHECEVCSKVFAQVNSYRIHLASHDAARGKVECQVCKLRFKNDVLAKSHVNRAHAKKFYCKTCPKVFNNVGVAKKHQRWHAGFRYACGWCSFSTLHESALGEHARRAHAHSHTCATCARACLSRRGLRLHAATAHPDVENTDVTEAYRCDACDINFVSEGARRIHLLTSVQHRKKSNLCDPSSQSSELRNTCSKCGIECSSFSELVSHARAEHPRVNRKKWRAHDSYPTQCELCDETVTCRRKHWHHVRRQHPKEIDTYRPIVTAVCDTCGKGFQNSTKLHLHQLRHRAPTVRCDTCPRLFYDKYALARHAITHKTNKPHQCRTCGRAFKLRSNLERHSRVHSDITPYECTMCNKKFKYSSSVNLHIRTVHYKLPHPPRKKRNKLAKTSASGNTNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00157567;
- 90% Identity
- iTF_00823956;
- 80% Identity
- iTF_00823956;