Hcun007877.1
Basic Information
- Insect
- Hyphantria cunea
- Gene Symbol
- -
- Assembly
- GCA_003709505.1
- Location
- PKRV01000444.1:128705-144265[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0086 0.54 10.9 1.0 1 23 238 261 238 261 0.93 2 11 0.076 4.7 7.9 3.6 1 23 265 287 265 287 0.96 3 11 9.2e-05 0.0058 17.1 3.9 1 23 292 315 292 315 0.98 4 11 0.00023 0.014 15.8 1.9 1 23 319 342 319 342 0.95 5 11 0.013 0.79 10.4 0.1 2 20 360 378 360 379 0.94 6 11 3.3 2e+02 2.8 0.6 3 23 394 413 392 413 0.81 7 11 0.00073 0.046 14.3 4.7 3 23 439 460 435 460 0.96 8 11 2.1e-05 0.0013 19.1 3.4 2 23 470 491 469 491 0.97 9 11 1.6e-05 0.00099 19.5 1.7 1 23 497 519 497 519 0.98 10 11 1.1e-07 7e-06 26.3 0.3 1 23 525 547 525 547 0.98 11 11 1e-05 0.00064 20.1 1.0 3 23 555 576 553 576 0.97
Sequence Information
- Coding Sequence
- ATGGAGAGGCTATTGATGTGTAGAATTTGTTTATCAGCAGATATGCGCATGGTTTCGCTAGATAATGCGCATCTTCAAgaaatgtatgaaaaattaaCTGCGACGCCGTTTAAAACTGAAGATATCAGACCGTTACAAGCCTGTTACATCTGCTATGCCAGGCTTCAGAACTGCTACCAACTCCAAAAGATCTGTCTACAGAATGAGGAGTTGTTCACAGAGATGATTAAGTCCAATTTGCTCAAACCTTCAAAATTATCCGAAAATCCAGGCCCTCTGATGCTGGTTGTTAGTCCAGTTGTACACTTCAGTACTTTGGATACAGAACAGGAGGCAGAAGCAGTGAAAACAGAAGTGTCAGAAGCATTTGGGGTTATTGAAGTTAAACAGGAAGAGTCGGAAGCCATGAAGAATGGAATTTTAGGATTGGATGACATGGAAATGGATGATCGTGATATCCAATCTTCAGATCCAGAGGATGATATACCGctaaaagtgataaaaaatgAGTCGGAGAGGAAAATTAGAAGGAAGAAGAGACTCGGAGTAAGAAGAGACAAACCagaagatattaaaacaacgTTCAAAGTGGATGCTCATGAGATTATTCTATCAAAAGAGGAGCAGGTGGCCAACTTGATGGCCAGGTCCAAGACCTTGAACTACATTCTGTCCCCGTACAAATGTGAGCTGTGCTACAAAGGTGGGAGTCACTCGTGCGAGATATGCCGCATGCGTTACCGCTCCGCTCAACTCCTTCGCACTCATTCCGTAACAGCGCACTCGCGTCTCTTCAAGTGCAATAAGTGTGGACATACTACACACACTGCTAACCAAGCGAGAGTCCATGAGAAATGGCACAGCGGGTTCACGTATGAGTGTCAACTGTGTGGTCACAAGTTCAGGAAACCAACATCGTATCTATCCCACATGAGGAAACGCCACCCGACTGAGCACGTTTGCAACATTTGTGGAGAAAGCTTCGTCGGTAAGCATGGCCTGCAGATGCACAAGAGTAAGAGCCACAAGAATGATGCAACGGTGAACGAGACCCATGAGGAACCTGAAGCCGATAGGTACTGCACCGAGTGTGATATCCAGTTCTTCAGCAGGGAAGCCTGGAAGAGACATATACTGTGCTCAGTGAAACATACCCTCAGGAATGAGGCAAGGTCGTGTTGTCAGATCTGCGGCTGGCGCGGAGACAGCTCGAGCCTGGGGCCGCACCTGCGCCAGCACGCCAGCTCCCTGCGCCGCGGCCCCCTCGCCCCCCTCGCCCCCCTCGCCGCGCGACCCGACCACCACCACTGCGGCTGTACCCAGTGCGGGATGAATTTTATTAGCCGATCAAAACTGCAAGCACATATCAACAGAATACATTTAGGGctcaaatataataagaatatcgTGTGTGAGGTTTGCGGCAAACATTGTACGTCGAATGCGACGTTAAAGTACCACCAACGGACCCATACAGGAGAAAGACCATATTCCTGTACAGCGTGTTCTAAGCAATTCTCAGACAGTAACCAGCTGAGGATCCACACCCGGACCCACACTGGGGAGAAGCCCTATGAATGTGCTGTATGTGGGAAGAGATTCAGCCAAAAACCTGCCTTGAACAGACACTACCGGGTCCACACGGGCGATAAACCATATGGATGTCAGTACTGTTCTAGAACTTTCAGCCAGTCAAATTCTCTGAAGCTTCACGTCCGAACGGTACATTTGAAACTACCCGCAAACAGCAGAAAGAAGACACAAGAGAAGGTGCAGGAGGAGAGCGAAAAGAACGACCAGAAACTTCTTGTTATTAGTCAAACACAGGAAACATTATCatga
- Protein Sequence
- MERLLMCRICLSADMRMVSLDNAHLQEMYEKLTATPFKTEDIRPLQACYICYARLQNCYQLQKICLQNEELFTEMIKSNLLKPSKLSENPGPLMLVVSPVVHFSTLDTEQEAEAVKTEVSEAFGVIEVKQEESEAMKNGILGLDDMEMDDRDIQSSDPEDDIPLKVIKNESERKIRRKKRLGVRRDKPEDIKTTFKVDAHEIILSKEEQVANLMARSKTLNYILSPYKCELCYKGGSHSCEICRMRYRSAQLLRTHSVTAHSRLFKCNKCGHTTHTANQARVHEKWHSGFTYECQLCGHKFRKPTSYLSHMRKRHPTEHVCNICGESFVGKHGLQMHKSKSHKNDATVNETHEEPEADRYCTECDIQFFSREAWKRHILCSVKHTLRNEARSCCQICGWRGDSSSLGPHLRQHASSLRRGPLAPLAPLAARPDHHHCGCTQCGMNFISRSKLQAHINRIHLGLKYNKNIVCEVCGKHCTSNATLKYHQRTHTGERPYSCTACSKQFSDSNQLRIHTRTHTGEKPYECAVCGKRFSQKPALNRHYRVHTGDKPYGCQYCSRTFSQSNSLKLHVRTVHLKLPANSRKKTQEKVQEESEKNDQKLLVISQTQETLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00441800;
- 90% Identity
- -
- 80% Identity
- -