Basic Information

Insect: Hyphantria cunea
Gene Symbol: -
Assembly: GCA_003709505.1
Location: PKRV01002826.1:140810-144487[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.83 52 4.6 2.1 2 23 214 236 211 236 0.87

2 10 3.1e-05 0.0019 18.6 1.1 1 23 242 264 242 264 0.99

3 10 0.028 1.7 9.3 6.7 1 23 270 293 270 293 0.96

4 10 0.0039 0.24 12.0 0.2 2 20 300 318 299 320 0.94

5 10 0.00013 0.0082 16.6 8.0 2 23 342 363 341 363 0.96

6 10 7.8e-07 4.8e-05 23.6 3.2 1 23 370 392 370 392 0.98

7 10 3.5e-05 0.0022 18.4 0.5 1 23 398 420 398 420 0.97

8 10 6.1e-06 0.00038 20.8 2.1 1 23 426 448 426 448 0.96

9 10 1.5e-05 0.00091 19.6 3.8 1 23 454 476 454 476 0.98

10 10 0.00022 0.014 15.9 3.5 1 23 482 505 482 505 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.83	52	4.6	2.1	2	23	214	236	211	236	0.87
2	10	3.1e-05	0.0019	18.6	1.1	1	23	242	264	242	264	0.99
3	10	0.028	1.7	9.3	6.7	1	23	270	293	270	293	0.96
4	10	0.0039	0.24	12.0	0.2	2	20	300	318	299	320	0.94
5	10	0.00013	0.0082	16.6	8.0	2	23	342	363	341	363	0.96
6	10	7.8e-07	4.8e-05	23.6	3.2	1	23	370	392	370	392	0.98
7	10	3.5e-05	0.0022	18.4	0.5	1	23	398	420	398	420	0.97
8	10	6.1e-06	0.00038	20.8	2.1	1	23	426	448	426	448	0.96
9	10	1.5e-05	0.00091	19.6	3.8	1	23	454	476	454	476	0.98
10	10	0.00022	0.014	15.9	3.5	1	23	482	505	482	505	0.97

Sequence Information

Coding Sequence: ATGTCGGAAGACGAAGAAGAGTCCCATTGTCGTTTATGCGCAGAACCAACACCAAAATCCCAACTAATAGCTCCAGATGAAGACGTAGGCCTTAACTCAAAGATAGCTATGAAAATGTTATGGATAAATATCGATGTTTCAGTTACAAGTGGACTACCAGACTCTATCTGTTTCTCTTGTTTCGACGCACTGCAACGTACTTGGCTCTTCCTTCATGCCGTAAGAACCGCTCAGACgaaattaaatgatatatatcTGAAAAAAGTTGAGCCAAGGAAAGACTCATCAGATGTTAAAACAGACCCTGATGTAGCTGGTAATCCTGTCAATGTAGAATGGGAGGAATTTGAAGTGTCAAAACAAGAGGTGAAACCGGAAGTAGACGACCAGCCTCATGTAATACCCGTGGATGCCAATACGTTGTTAAATCTAAACATAATCAAATCTGAACTGGACACTGACGGTGAACGAAATGACTCCGATGGTTTTAATACCAGCGATAGTGATTTACCCCTTTATTTAACtgctaaaaagaaaatcaagaagaagaagaagaataaagttAGTTACCAGTCTGAAAATGATTCCGATATATTAACAGAACATTGTTCTAAGTTAACGTGGGATGATTACATGTGCCGTTGTGCCGATTGTGATGCCCAGTGCAAGAATATTATGTCCTTACGTCTCCACTCACTACAGATTCATGCTCACTGTTGTATATTTAAGTGCTCCGAATGTGGCAAAGTAATAACTAGTTATAAAACCTTTGTGAACCATGTGCGAACTCATAAAAGGCTCTTACGATATTGCTGTGAGTACTGTAATGAGTGTTTCTTAAAGACTTCAAACCTCAAATCACACCGTAGTCGAGTGCACAAAGAGGCCTACTCAACAACCTGCCATAGCTGTGGTTCAACATTTGAAACCACCGAACAACTTCAAGACCACATAATTTTGTATACGAAAACGTACCGAAAACGCAcagtgaaaaaagaaaaagtagatGTTACAGAGGACTTAAAATGTGAGCATTGCCACAAAGAGTTTAAATCACGTAGTAACTTACATCAGCACAAACTAGTACACACAGAACGGAGTAGAGACTTTTCCTGTCATGTTTGCGGTAAAATGTTTTTCACGAAAGGCACTTTGAGCACTCATATGATGACCCACGATGACGCCAAGCCCTTCAAGTGTGAGTTCTGTCCAATGACATTCCGTGCCCGAGGTAACCTCCAATCTCATATTAGTCTTCATTCTGGTGCTAAACCATTTGTATGTGAACAATGCGGAAAGAGTTTTCGTGTGAAACGTCATTTGAAATCACATTCCATTATACatacggacttaatgccttacGTTTGTAATTATTGCAATAAGACTTTTAGATTTAAGACTAGATTAAACTTACATTTACGACAGCACACTGGAGCTAAACCGTACAATTGTGTTTTCTGTCAACGTGACTTTACTAACGgatctaattataaaaaacatatgaaaCGTAAACACAATATTGACACATCTTCTAGAAAGAAATTGAGTAATATCGCAACTCAATATAGTAATACGAACGAACAGAATTTAGAGACAAGTGACATTGAGAGAAATTAA
Protein Sequence: MSEDEEESHCRLCAEPTPKSQLIAPDEDVGLNSKIAMKMLWINIDVSVTSGLPDSICFSCFDALQRTWLFLHAVRTAQTKLNDIYLKKVEPRKDSSDVKTDPDVAGNPVNVEWEEFEVSKQEVKPEVDDQPHVIPVDANTLLNLNIIKSELDTDGERNDSDGFNTSDSDLPLYLTAKKKIKKKKKNKVSYQSENDSDILTEHCSKLTWDDYMCRCADCDAQCKNIMSLRLHSLQIHAHCCIFKCSECGKVITSYKTFVNHVRTHKRLLRYCCEYCNECFLKTSNLKSHRSRVHKEAYSTTCHSCGSTFETTEQLQDHIILYTKTYRKRTVKKEKVDVTEDLKCEHCHKEFKSRSNLHQHKLVHTERSRDFSCHVCGKMFFTKGTLSTHMMTHDDAKPFKCEFCPMTFRARGNLQSHISLHSGAKPFVCEQCGKSFRVKRHLKSHSIIHTDLMPYVCNYCNKTFRFKTRLNLHLRQHTGAKPYNCVFCQRDFTNGSNYKKHMKRKHNIDTSSRKKLSNIATQYSNTNEQNLETSDIERN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01360957;
90% Identity: iTF_00441807;
80% Identity: -