Basic Information

Insect: Hyphantria cunea
Gene Symbol: -
Assembly: GCA_003709505.1
Location: PKRV01001585.1:108757-118304[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.011 0.68 10.6 0.1 1 23 224 246 224 246 0.94

2 10 0.025 1.6 9.4 0.1 2 20 274 292 273 294 0.93

3 10 8.4e-05 0.0052 17.2 0.4 3 23 319 339 318 339 0.98

4 10 8.3e-08 5.2e-06 26.7 0.2 1 23 343 365 343 365 0.98

5 10 0.17 11 6.8 0.7 1 23 370 393 370 393 0.94

6 10 0.14 8.7 7.1 0.4 1 23 399 422 399 422 0.92

7 10 6.2e-05 0.0039 17.6 0.7 1 23 429 452 429 452 0.98

8 10 2.2e-05 0.0014 19.1 2.3 1 23 458 480 458 480 0.98

9 10 1e-05 0.00064 20.1 3.1 1 23 486 508 486 508 0.98

10 10 1.5e-06 9.3e-05 22.7 1.0 1 23 514 536 514 536 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.011	0.68	10.6	0.1	1	23	224	246	224	246	0.94
2	10	0.025	1.6	9.4	0.1	2	20	274	292	273	294	0.93
3	10	8.4e-05	0.0052	17.2	0.4	3	23	319	339	318	339	0.98
4	10	8.3e-08	5.2e-06	26.7	0.2	1	23	343	365	343	365	0.98
5	10	0.17	11	6.8	0.7	1	23	370	393	370	393	0.94
6	10	0.14	8.7	7.1	0.4	1	23	399	422	399	422	0.92
7	10	6.2e-05	0.0039	17.6	0.7	1	23	429	452	429	452	0.98
8	10	2.2e-05	0.0014	19.1	2.3	1	23	458	480	458	480	0.98
9	10	1e-05	0.00064	20.1	3.1	1	23	486	508	486	508	0.98
10	10	1.5e-06	9.3e-05	22.7	1.0	1	23	514	536	514	536	0.98

Sequence Information

Coding Sequence: atGGATTCTGAGATAATGGTAGAGTCTCTGCCATTGCTGGGCACGTGCAATTTGTGCTTGGAAGAAGGTGTAGTCAAAAGTATGATTTTAGCTCACCAATACAAAGGGAAAACAGAAATTTATTCTGAAATGCTGATAAAATGCTTTTCAATAGACATAACAACTCTCCATCTCGGTGATACAAAGCCTTTGGTTTGCAACACTTGCATCAACAGGCTGAGGGACTCGGCGGACTTCAAACAACAAGTGATGGCTTCGCTTGATACCTTGGAGACTATGGTTAAAATTAACAAGGAAGAGCAGAACTCTTTAGGCGTTGTGAAAAAGGAGGTAAAAAACTGTGTGATAGCTGATGACTTTGATGATGACGTGGATATAGAGAAAAGGAAGAACTCTTTAGGAGGACAAGTGAAAAAGGAGGACTCAATGGAATCTGATGATTTTGATGACGTCTttcctgatgatgatgacatggaTATAGGTCTCAAAACTGTAATCAAGAAAGAAAAAGAGCATGGAGTGTTCAGTCGGAAAACTCGCAGCAAAACAGTGGCGACAAAGAAGATAAAATTATCGAAGTATCCTTTAAAAAAGACCACAGATCTATCAGAAACGGAAGCCATGTTAAAAATAGGTCTTTTTCCATTTAAAATCAAGAAGAATCGGTCGTTCTCCTGCTCGATATGTCCAGAGAAGTCTACTAATCTAGATGATATTAAGACCCACATAGTCGATCACAACAAGACTAATATAAATTTGGCATTCAAAAAAATGATGTCATCTAACTCCCATAGGTTCTACAAGTCTGCTGTAAATTTAAGATGCAAGATGTGTACCACAGATGTTAGTAATTACGAAGAATTGAAACAGCACATAGAGAACTGTACcagattaaaatttacaaatagaaaATGGAATAATTTGCCGTTCAAGCTTGAGAAAGACCAAGTCGATTGTCCGGTATgtaagaaaacttttttaaattatgtcaaTTTGAATACTCACATGAATATTCACTATCCTAATTATATTTGTGAGAATTGTGGGAAAGCTTTCGCTTCGAAAGCCAGGCTTCGGGCCCACATGCGGACACACGAAGTAGGTACATTTCCTTGTAGATATTGTGAGCAAATCTTTGACCGAGTAACGAAAAGGGAAAACCATGTATCGAAAGAACACAAATCCGGTGTTAGGTACGCTTGCAAACGGTGTAATATATCTTTGACATCGTTTTATGCTCGTCAGAAACATTTGGCGGAAGTACATAACGAAGAATTAAAAAGATACAAATGTAAAGCGTGTCCGCAATCTTACATAACACCTGGACATTTATCGAGTCATGTCCGCAGAGATCATTTGAACGAACGCAATCACAAATGCGATAAATGCGATTTGGCATTTTATACAAAGAATGCTTTGAAAATGCATATGATCAAGCACGACGGGGAACGGATACACACTTGTCCGGTGTGCCAGAAGTCTTACCAGAGGAAAAAAACGTTGCGAGAACATTTGAggattcataataatgataaaagattTGTTTGTCCAGTGTGTGGACGCGCCTTTACTCAGAAATGTACGCTCAAAGGTCATTTGAAAGTCCATGAGAGACAATTCGATGAAGACGATAGAGTGCCACAGCCTTTACATTCGATATAA
Protein Sequence: MDSEIMVESLPLLGTCNLCLEEGVVKSMILAHQYKGKTEIYSEMLIKCFSIDITTLHLGDTKPLVCNTCINRLRDSADFKQQVMASLDTLETMVKINKEEQNSLGVVKKEVKNCVIADDFDDDVDIEKRKNSLGGQVKKEDSMESDDFDDVFPDDDDMDIGLKTVIKKEKEHGVFSRKTRSKTVATKKIKLSKYPLKKTTDLSETEAMLKIGLFPFKIKKNRSFSCSICPEKSTNLDDIKTHIVDHNKTNINLAFKKMMSSNSHRFYKSAVNLRCKMCTTDVSNYEELKQHIENCTRLKFTNRKWNNLPFKLEKDQVDCPVCKKTFLNYVNLNTHMNIHYPNYICENCGKAFASKARLRAHMRTHEVGTFPCRYCEQIFDRVTKRENHVSKEHKSGVRYACKRCNISLTSFYARQKHLAEVHNEELKRYKCKACPQSYITPGHLSSHVRRDHLNERNHKCDKCDLAFYTKNALKMHMIKHDGERIHTCPVCQKSYQRKKTLREHLRIHNNDKRFVCPVCGRAFTQKCTLKGHLKVHERQFDEDDRVPQPLHSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01198045;
90% Identity: iTF_01198045;
80% Identity: -