Hcun005527.1
Basic Information
- Insect
- Hyphantria cunea
- Gene Symbol
- -
- Assembly
- GCA_003709505.1
- Location
- PKRV01001585.1:193252-195762[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.06 3.7 8.2 0.3 1 23 71 93 71 93 0.96 2 15 1.4 85 4.0 0.3 3 23 122 143 120 143 0.87 3 15 0.63 39 5.0 1.6 1 23 165 187 165 187 0.97 4 15 2e-06 0.00012 22.3 1.3 1 23 191 213 191 213 0.97 5 15 1.5 95 3.8 0.7 1 23 218 241 218 241 0.87 6 15 0.0061 0.38 11.4 0.2 2 23 248 270 248 270 0.95 7 15 0.049 3 8.5 0.1 1 23 318 340 318 340 0.96 8 15 0.00013 0.0083 16.6 1.1 1 23 408 430 408 430 0.98 9 15 0.00011 0.0067 16.9 0.5 3 23 436 456 434 456 0.95 10 15 0.018 1.1 9.9 0.5 1 23 464 487 464 487 0.95 11 15 0.053 3.3 8.4 1.4 1 23 493 516 493 516 0.95 12 15 0.059 3.7 8.2 1.0 1 23 522 545 522 545 0.96 13 15 6e-05 0.0037 17.7 0.6 1 23 551 573 551 573 0.97 14 15 3.9e-07 2.5e-05 24.5 0.8 1 23 579 601 579 601 0.99 15 15 1.8e-06 0.00011 22.5 5.4 1 23 607 629 607 630 0.96
Sequence Information
- Coding Sequence
- ATGTTAGTGGACAACAGAAAGAAtaacaagaaatataatatgGCTAAGAAAAAGTTTCCAAGCTATGgAGCGAGTAAGGAAGACGTGGGAACAAAACCTTTGACTACGGTTATTTGGAAGCGAAAACGAAAACTCGTCGAAGATAAACAGAATGCGGCTCTCATTATAAACCATTccaatgtagttttatttagatataagaGAGGGAAATTCATGTGCGCTCACTGCCCTGGAATATTTGCAACTGTAGTAGAGCTCAGAATGCATTCAAAGCAacacgaaaataataaaatgctgATATTTGAGGAGAAACCTGCTGTAATAAACACTTATCCTCTTAGAATCGATATAACTGATTTAGCGTGTACTATATGCGGAGAagctacattaaaatttaatgacttTAAGAAGCATTTATTAGACAAACACTCTAAAAGTTTAAATCCAGAATATTCAGATGGAGTCATACCTTATATTTTAACTGGTAAAGAATACAGGTGTGTCCATTGCGATTTACTTTGCGAGAGTGTTATGACAATATTTGCTCACATGAACGTCCATTATAAACATCATGTATGTCCTACATGTGGTAAAGGCTATTCTAATTTCCAGAACCTTAGAAGCCATCTAAGAATTCATGAGTCTGGGCAATTTCGCTGTCCAAAATGTGAATCAATTTTCTTGACACATTCTGCCAAAAATAGCCATGTCTCTATCGCACATGGAAGGAAAGATCGAAATAGATGTCCGATTTGTAATGAGCGATTTGATTCTTACTATGCCAGAGTGAAACATCTAGATCGAGTTCACGCTCGGAAAGTTGAATATAAATggACCGTCGAACCAAAAGTAAAATGGCGACCGAAGCGCAAGTTTAATGATCAGAGAGATAACGCAGCAATCATACTTGAATATTCCAACGCTTGTCCGTTTCGATGGAAGAGGGGGGCCTTCACTTGCGCCTACTGTCCCCTCTCCTATGGAGATTTCAGTGGTATCCGAGACCACATTATCGATCATCCCAATAGAATTGAAGCGATGCGACTTGCCCGCACCTTTGCTAATCTTAAAGTTGAAATCACTAACTTACAATGCGTACTATGTCTTGAACCTATGGACAAATTAGATGCTTTTATCGATCATTTAATATCTAGACACAATAAATCCATAAATAAGGAACTAGGATTAGGCACTACGCCTTTTTTATTATCCGGCAAGGAATACAATTGTACTCTTTGCGGTGAAAGTTTCGAACTCTTCTCAAAACTCAACACCCATTTGAATAAACATTATCCTAATAGTATATGTTTCTTATGTGGCAAAGCGTTTTCTACCGCTCATAGATTAAAAGCACATCTCGTTGTTCACAACTCAGGCGAGACGGAACGATATAAATGCACTAGATGTTCAATATTCTTCGCTACTAAAGCGTTAAGGAATAGCCACGTGGCTTCTGCCCACAGCAAGGAGTACAGATATAAGTGCCCATATTGTaacgattattttaaaaactacggAGATAGGGGTAAGCATTTGAAAGAATCCCACGGAAAGAAAATTGAATACCCATGTAGTTTGTGCACAGCAGTTTTCGCTATGTGCAATCAAAGGACTAAACATATTCAACAAGTTCATTTTCGCCATAAGAAATTCTCTTGTAGTTTTTGCCCTTATAAGTTTGTCACTGCAGCCCAGTTGAGGAATCATTTAGTTAAGCATGGTGGTGAAAGAAAATTTCAATGTGAAGTATGTAAGAAATCGTACGCTAGGGCTAAAACCTTAAGAGAGCATATGCGAATACATAATAATGACAAGAGATTCGTTTGTGAATATTGTACTAAAGCGTTTGTACAAAAATGTAGTTTACAAAGTCATATGAGAACACATCATCCGAATGCTGAACcgttaaagaatattaaattgtgtgtgtaa
- Protein Sequence
- MLVDNRKNNKKYNMAKKKFPSYGASKEDVGTKPLTTVIWKRKRKLVEDKQNAALIINHSNVVLFRYKRGKFMCAHCPGIFATVVELRMHSKQHENNKMLIFEEKPAVINTYPLRIDITDLACTICGEATLKFNDFKKHLLDKHSKSLNPEYSDGVIPYILTGKEYRCVHCDLLCESVMTIFAHMNVHYKHHVCPTCGKGYSNFQNLRSHLRIHESGQFRCPKCESIFLTHSAKNSHVSIAHGRKDRNRCPICNERFDSYYARVKHLDRVHARKVEYKWTVEPKVKWRPKRKFNDQRDNAAIILEYSNACPFRWKRGAFTCAYCPLSYGDFSGIRDHIIDHPNRIEAMRLARTFANLKVEITNLQCVLCLEPMDKLDAFIDHLISRHNKSINKELGLGTTPFLLSGKEYNCTLCGESFELFSKLNTHLNKHYPNSICFLCGKAFSTAHRLKAHLVVHNSGETERYKCTRCSIFFATKALRNSHVASAHSKEYRYKCPYCNDYFKNYGDRGKHLKESHGKKIEYPCSLCTAVFAMCNQRTKHIQQVHFRHKKFSCSFCPYKFVTAAQLRNHLVKHGGERKFQCEVCKKSYARAKTLREHMRIHNNDKRFVCEYCTKAFVQKCSLQSHMRTHHPNAEPLKNIKLCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -