Basic Information

Insect: Hyphantria cunea
Gene Symbol: -
Assembly: GCA_003709505.1
Location: PKRV01000234.1:213255-217737[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.043 2.7 8.7 1.0 5 21 220 236 218 237 0.94

2 12 0.00064 0.04 14.4 1.4 2 23 256 277 255 277 0.97

3 12 0.0001 0.0065 16.9 1.9 1 23 302 324 302 324 0.99

4 12 1.5e-05 0.00094 19.6 1.1 1 23 332 355 332 355 0.97

5 12 0.013 0.84 10.3 1.1 1 23 361 383 361 383 0.98

6 12 0.0037 0.23 12.0 8.6 1 23 389 411 389 411 0.97

7 12 1.2e-07 7.3e-06 26.2 1.3 1 23 417 439 417 439 0.96

8 12 1.8e-05 0.0011 19.3 0.9 1 23 445 467 445 467 0.99

9 12 8.7e-07 5.4e-05 23.5 0.2 1 23 473 495 473 495 0.98

10 12 1.9e-05 0.0012 19.3 0.4 1 23 501 523 501 523 0.99

11 12 3.5e-05 0.0022 18.4 2.2 1 21 529 549 529 551 0.96

12 12 4.1e-07 2.5e-05 24.5 0.4 1 23 557 579 557 579 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.043	2.7	8.7	1.0	5	21	220	236	218	237	0.94
2	12	0.00064	0.04	14.4	1.4	2	23	256	277	255	277	0.97
3	12	0.0001	0.0065	16.9	1.9	1	23	302	324	302	324	0.99
4	12	1.5e-05	0.00094	19.6	1.1	1	23	332	355	332	355	0.97
5	12	0.013	0.84	10.3	1.1	1	23	361	383	361	383	0.98
6	12	0.0037	0.23	12.0	8.6	1	23	389	411	389	411	0.97
7	12	1.2e-07	7.3e-06	26.2	1.3	1	23	417	439	417	439	0.96
8	12	1.8e-05	0.0011	19.3	0.9	1	23	445	467	445	467	0.99
9	12	8.7e-07	5.4e-05	23.5	0.2	1	23	473	495	473	495	0.98
10	12	1.9e-05	0.0012	19.3	0.4	1	23	501	523	501	523	0.99
11	12	3.5e-05	0.0022	18.4	2.2	1	21	529	549	529	551	0.96
12	12	4.1e-07	2.5e-05	24.5	0.4	1	23	557	579	557	579	0.98

Sequence Information

Coding Sequence: atggaaATGAATGTggaattatttgataaaatatgccGACTCTGTTTAATACAATCTATCGAATTGAAATCCCTGTTTGCAAAGACAGACGGCGATGATCGGAGTTTGCTtgaaatactagcttttacggCAAATATCGATGTTAAAATTGAAGACGGCCTTCCAAAACAGGTGTGTAAAGATTGTGAATCTATTTTATGTAAGGCAGACGCGTTCATACGTCGATGTCATGAGTCTGAGACCATTTTGCATAATGTTTACCTAACTACAAATACAATCACGGAGATTTCAACAAAATGCCTCCAAAACTATTCAATTAAGAATGAAAAGACAGATCTGAAAGAAAAATTGAGTGTGTATGGTACTCTTCTATCTCCAATCCCCTCAAATAGCGCCTCACACTatgatttaaataagaaaagcATAGAGTTTCCACTATGTACAGCCACAGGACTAAGTCCAAACAAATTTACTCCAGAATTCTCCGATAAAGAGCAGCATATAGTTAAGAAAGAGACATCAAGTAGTAATGATGAAGAGAATCAGTATTTGGACCATTTTGATAATGGTGATCATTTTGACAATCCTTTTGACAGCCCGGAGAAGAATCTAGAAGTGAAAacggtgaaaaaaaaaattggtattcGTTATGAATGCTACTGTCACACACAGTTCTCGAACAAAGAGGATTATAAATCtcatttaaaggaaaaaaagtgTGATGCATTGAAAattgtaaaatcaaataaaagtaagCATAAAATTCCGTGtacaaaatgtgaaaaaaaatttacttcttTTAATGGTTGGAAATACCATCAGAATACACATAGAGAGGATAGTCCAATTAACCAAAATACAGACAGTAATATAGATGcaaatttaaacaacaaaacgGAATCATTCCAATGTTCTTTTTGTTTacgacaatttaaaaataaggtttcACTCTCTGCTCACATACAGAAACACGAAGAAACAGATAGTATAAAACATGTTTGTGAAATTTGTAAACGTGAATTCAAATACAAAGCTTATTTAGAAAACCATTTACTGACTGCACATTCTCGGACAAACGGATTCACCTGTGATATTTGCATGCAAAGTTTCTTGAATAAAGAAGCTCTACAGACTCACAAGAAAAGTCATGAAAGTGAAAAGAAACACTGTTGTTCCGTTtgcaataaaacatttcaaatgttATGTAGTTTAAAAGAACATATGCGGACACACACGGGTGAAAAGCCTTTTTTATGTTCCCAGTGTGGGAAGGGCTTTAGTCAGAAGACAAATTTGGCTCAACATATGAGGAGACATCAGGGCTTAAAACCGTTTAAATGTGAGAGCTGTGAAAAAAGgttcGTGTCTAAAGGTGAGCTGGACGCCCACACGCGAAAACACAGCGGCGCACACCCATTCGTCTGCGATGACTGCGGAAACGGCTTCACAACTTCCAGTGCGCTGGTCAAACACCGTAGGATCCACACCGGAGAACGCCCTTACCAATGTGATCTATGCCCCATGAGATTCGCAGCATCTGGTACTTTAAAGAACCATAGGAGAACTCACACTGGAGAAAGGCCTTTTCAGTGTTCATATTGTGAGAAGGCGTTTGTCCAGAGAAATGATTTGATTTCTCATATCAGATGTCACACTGGTGAGCGACCATATATATGTAACCAATGCGGGCAATCTTTTAGAAAGGCCAGCGGGTTGAAAGCTCATCTCAAAATGCATATTAAGAATCCTATAGTGGGTGTAAATGCGATATTGACTAGCATGCATTGTATGGAGCAGTGA
Protein Sequence: MEMNVELFDKICRLCLIQSIELKSLFAKTDGDDRSLLEILAFTANIDVKIEDGLPKQVCKDCESILCKADAFIRRCHESETILHNVYLTTNTITEISTKCLQNYSIKNEKTDLKEKLSVYGTLLSPIPSNSASHYDLNKKSIEFPLCTATGLSPNKFTPEFSDKEQHIVKKETSSSNDEENQYLDHFDNGDHFDNPFDSPEKNLEVKTVKKKIGIRYECYCHTQFSNKEDYKSHLKEKKCDALKIVKSNKSKHKIPCTKCEKKFTSFNGWKYHQNTHREDSPINQNTDSNIDANLNNKTESFQCSFCLRQFKNKVSLSAHIQKHEETDSIKHVCEICKREFKYKAYLENHLLTAHSRTNGFTCDICMQSFLNKEALQTHKKSHESEKKHCCSVCNKTFQMLCSLKEHMRTHTGEKPFLCSQCGKGFSQKTNLAQHMRRHQGLKPFKCESCEKRFVSKGELDAHTRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGERPYQCDLCPMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGERPYICNQCGQSFRKASGLKAHLKMHIKNPIVGVNAILTSMHCMEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00823273;
90% Identity: -
80% Identity: -