Hcun016675.1
Basic Information
- Insect
- Hyphantria cunea
- Gene Symbol
- -
- Assembly
- GCA_003709505.1
- Location
- PKRV01001439.1:31766-38964[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0079 0.49 11.0 0.5 1 23 224 246 224 246 0.96 2 20 1.5 96 3.8 0.9 2 23 273 295 272 295 0.92 3 20 0.0046 0.28 11.8 0.1 1 23 318 340 318 340 0.98 4 20 2.8e-05 0.0017 18.7 0.4 1 23 344 367 344 367 0.97 5 20 0.0055 0.34 11.5 1.5 1 23 372 395 372 395 0.93 6 20 0.087 5.4 7.7 1.7 1 23 401 424 401 424 0.92 7 20 1.7e-07 1e-05 25.7 2.9 1 23 431 454 431 454 0.98 8 20 0.008 0.5 11.0 3.3 1 23 460 482 460 482 0.97 9 20 9.4e-07 5.9e-05 23.4 1.0 1 23 488 510 488 510 0.99 10 20 0.00016 0.01 16.3 3.4 1 23 516 538 516 539 0.96 11 20 0.0079 0.49 11.0 0.5 1 23 639 661 639 661 0.96 12 20 1.5 96 3.8 0.9 2 23 688 710 687 710 0.92 13 20 0.0046 0.28 11.8 0.1 1 23 733 755 733 755 0.98 14 20 2.8e-05 0.0017 18.7 0.4 1 23 759 782 759 782 0.97 15 20 0.0055 0.34 11.5 1.5 1 23 787 810 787 810 0.93 16 20 0.087 5.4 7.7 1.7 1 23 816 839 816 839 0.92 17 20 1.7e-07 1e-05 25.7 2.9 1 23 846 869 846 869 0.98 18 20 0.008 0.5 11.0 3.3 1 23 875 897 875 897 0.97 19 20 9.4e-07 5.9e-05 23.4 1.0 1 23 903 925 903 925 0.99 20 20 0.00016 0.01 16.3 3.4 1 23 931 953 931 954 0.96
Sequence Information
- Coding Sequence
- ATGGAAATAGATAATGCTATAAACTTGACATACGGACAGTGTCGTTGCTGTTTAGCTCACGGTCTTCACCGAGATCTGACGAGGGAATATTTCTTCAATGGTATTCGAGAAGTGTACAGTGAAATATTTTccgaaactttttatttcttcCTATCAAAGAGCACAAAATTGACAAAACTGATATGTTCAACATGTATACACCGTTTACGAGATGCAACCAGTTTCCGTATGATGACAGTGAGCACAGAGCGGCAGCTTCTAGAAGCTATAAGAATATCAAACGAGAAGAACACAGAATTTGTTGATGTTTCGGGTATTCACtacgtttataaaatacttttggcAGATTACTTATCAGAGAATGGGTGCGAAGACAACAATGAGTGTGAAGCAGCATTCCTGGAGAGATTCAAGGACCCACAGCCGCTTCCCACCAGAGCTTCCTTGCCGAATTTGTGCCCCGAGTTCTGCAAGCAACTTTTGTCTTTGAAagATACAAAAATACACCCACAGACAATATCCAGATTAGTAGAAGACTACGAACTCATTCGAGAGAGCAGAATCGTCCGCCGGCAAGGCATCACTGAAAAACAAGCCCACATTGTCAACGCAACCACTGTTCTAGAATGTTCCAACGTCACTCCCTTCAAAAGCAAGAGCCGGCTAGGGTTTCCATGCTTTTATTGCAGAAACGTCTTTGAAAGCCTCGACAGTCTGAAAGAACACACCGCTCAACACAAGTCACACGAAATACTCAAAGTCTTGAGAAGGTATGGAGCTGAAGCTTTAGTAGTGTACGTAGATATAACAGATCTGAAATGTACATTATGCAACAGGGATTTGTTGAATCTGAACGAATTGAAAcaccatttaataaatatacataaaaagaaaatgcatttggaatatacagaCAGAATTATCCCATTTAAGTTGGGCGACAGTCCCATTTTTGAATGTCTGATGTGTGGATTTAATTACGAGACTTTTGGAGCGATTGAACGTCATATGAACGTACACTTTAGGAACTATGTGTGCAAAGAGTGTGGTACAGGTTTTGCTACGAGGTACAGGCTTAAAGTACATGTGAAAAGTATGCACATAGGTGGGACACATCCTTGTGAGATTTGCGGCAAGATATTCTCCACACCGCTGAAGCATAAAAGCCATGTTAACACTGTACACAAATTGTTAAAACGGTTCAAGTGTACTAAATGTCCGGAACGCTTTGGAGAATACTTTAAAAGGCAGAAACATATGGTGCAGGTACACGGATTGGCACCCCTCAGGTACAAATGTAATGTTTGCGATAAGACTTTTGACAGGCGGTATACTTTATCCAGACATATGAAGCGGGACCATTTGGAGGAGAGGGATTATCAATGTGAATTGTGTTCTTACAAATGTTTTACAAAGAATGAGTTAAGTGTGCATATGGTGAAGCATAATGGGGAACGTATATACGAATGTTCTGTGTGTAAAAAGGCGTACGCCAGGAAGAAGACTTTGAAAGAACATATGCGCATACATAATAATGATAGGAGGTTCACTTGTGCTTTGTGCGGACAAGCGTTTGTGCAGAAGTGTAGTCTTAAAGGACACTTGAAGACCCATCACCTTGAATTCGtTGTAGCTAAAATATGTTATgcgaaatataatattatataaaactagctctTGACCTCTGTCCaggtgtatgtcgattatcgcggcacaAATTATGACGAATTTCATGGAAANACAAAAATACACCCACAGACAATATCCAGATTAGTAGAAGACTACGAACTCATTCGAGAGAGCAGAATCGTCCGCCGGCAAGGCATCACTGAAAAACAAGCCCACATTGTCAACGCAACCACTGTTCTAGAATGTTCCAACGTCACTCCCTTCAAAAGCAAGAGCCGGCTAGGGTTTCCATGCTTTTATTGCAGAAACGTCTTTGAAAGCCTCGACAGTCTGAAAGAACACACCGCTCAACACAAGTCACACGAAATACTCAAAGTCTTGAGAAGGTATGGAGCTGAAGCTTTAGTAGTGTACGTAGATATAACAGATCTGAAATGTACATTATGCAACAGGGATTTGTTGAATCTGAACGAATTGAAAcaccatttaataaatatacataaaaagaaaatgcatttggaatatacagaCAGAATTATCCCATTTAAGTTGGGCGACAGTCCCATTTTTGAATGTCTGATGTGTGGATTTAATTACGAGACTTTTGGAGCGATTGAACGTCATATGAACGTACACTTTAGGAACTATGTGTGCAAAGAGTGTGGTACAGGTTTTGCTACGAGGTACAGGCTTAAAGTACATGTGAAAAGTATGCACATAGGTGGGACACATCCTTGTGAGATTTGCGGCAAGATATTCTCCACACCGCTGAAGCATAAAAGCCATGTTAACACTGTACACAAATTGTTAAAACGGTTCAAGTGTACTAAATGTCCGGAACGCTTTGGAGAATACTTTAAAAGGCAGAAACATATGGTGCAGGTACACGGATTGGCACCTCTCAGGTACAAATGTAATGTTTGCGATAAGACTTTTGACAGGCGGTATACTTTATCCAGACATATGAAGCGGGACCATTTGGAGGAGAGGGATTATCAATGTGAATTGTGTTCTTACAAATGTTTTACAAAGAATGAGTTAAGTGTGCATATGGTGAAGCATAATGGGGAACGTATATACGAATGTTCTGTGTGTAAAAAGGCGTACGCCAGGAAGAAGACTTTGAAAGAACATATGCGCATACATAATAATGATAGGAGGTTCACTTGTGCTCTGTGCGGACAAGCGTTTGTGCAGAAGTGTAGTCTTAAAGGACACTTGAAGACCCATCACCTTGAATTCGGTATGTAA
- Protein Sequence
- MEIDNAINLTYGQCRCCLAHGLHRDLTREYFFNGIREVYSEIFSETFYFFLSKSTKLTKLICSTCIHRLRDATSFRMMTVSTERQLLEAIRISNEKNTEFVDVSGIHYVYKILLADYLSENGCEDNNECEAAFLERFKDPQPLPTRASLPNLCPEFCKQLLSLKDTKIHPQTISRLVEDYELIRESRIVRRQGITEKQAHIVNATTVLECSNVTPFKSKSRLGFPCFYCRNVFESLDSLKEHTAQHKSHEILKVLRRYGAEALVVYVDITDLKCTLCNRDLLNLNELKHHLINIHKKKMHLEYTDRIIPFKLGDSPIFECLMCGFNYETFGAIERHMNVHFRNYVCKECGTGFATRYRLKVHVKSMHIGGTHPCEICGKIFSTPLKHKSHVNTVHKLLKRFKCTKCPERFGEYFKRQKHMVQVHGLAPLRYKCNVCDKTFDRRYTLSRHMKRDHLEERDYQCELCSYKCFTKNELSVHMVKHNGERIYECSVCKKAYARKKTLKEHMRIHNNDRRFTCALCGQAFVQKCSLKGHLKTHHLEFVVAKICYAKYNII*N*LLTSVQVYVDYRGTNYDEFHGXTKIHPQTISRLVEDYELIRESRIVRRQGITEKQAHIVNATTVLECSNVTPFKSKSRLGFPCFYCRNVFESLDSLKEHTAQHKSHEILKVLRRYGAEALVVYVDITDLKCTLCNRDLLNLNELKHHLINIHKKKMHLEYTDRIIPFKLGDSPIFECLMCGFNYETFGAIERHMNVHFRNYVCKECGTGFATRYRLKVHVKSMHIGGTHPCEICGKIFSTPLKHKSHVNTVHKLLKRFKCTKCPERFGEYFKRQKHMVQVHGLAPLRYKCNVCDKTFDRRYTLSRHMKRDHLEERDYQCELCSYKCFTKNELSVHMVKHNGERIYECSVCKKAYARKKTLKEHMRIHNNDRRFTCALCGQAFVQKCSLKGHLKTHHLEFGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -